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"CGGAT":49790, "CGGAC":35652, "CGGAG":77943, "CGGTA":34441, "CGGTT":57148, "CGGTC":54673, "CGGTG":64223, "CGGCA":80203, "CGGCT":72422, "CGGCC":76908, "CGGCG":94980, "CGGGA":55698, "CGGGT":48591, "CGGGC":57012, "CGGGG":58760, "GAAAA":113008, "GAAAT":70095, "GAAAC":74240, "GAAAG":87039, "GAATA":45745, "GAATT":54093, "GAATC":59273, "GAATG":52612, "GAACA":70621, "GAACT":237200, "GAACC":77863, "GAACG":48894, "GAAGA":710107, "GAAGT":50128, "GAAGC":102732, "GAAGG":79816, "GATAA":43513, "GATAT":41071, "GATAC":28676, "GATAG":55224, "GATTA":36620, "GATTT":74040, "GATTC":61132, "GATTG":56064, "GATCA":67058, "GATCT":60272, "GATCC":59270, "GATCG":727268, "GATGA":87420, "GATGT":47551, "GATGC":53692, "GATGG":74457, "GACAA":63430, "GACAT":41349, "GACAC":34267, "GACAG":54521, "GACTA":25188, "GACTT":50167, "GACTC":34776, "GACTG":35987, "GACCA":69686, "GACCT":51241, "GACCC":59610, "GACCG":56908, "GACGA":69191, "GACGT":31113, "GACGC":44681, "GACGG":51035, "GAGAA":100466, "GAGAT":213018, "GAGAC":57907, "GAGAG":65054, "GAGTA":25655, "GAGTT":44659, "GAGTC":31695, "GAGTG":26672, "GAGCA":542428, "GAGCT":46397, "GAGCC":61497, "GAGCG":44901, "GAGGA":115728, "GAGGT":52922, "GAGGC":69077, "GAGGG":54678, "GTAAA":25802, "GTAAT":23501, "GTAAC":22596, "GTAAG":22498, "GTATA":15218, "GTATT":31422, "GTATC":26737, "GTATG":25154, "GTACA":22162, "GTACT":19927, "GTACC":23326, "GTACG":19089, "GTAGA":89773, "GTAGT":22803, "GTAGC":30759, "GTAGG":28589, "GTTAA":18277, "GTTAT":27247, "GTTAC":25198, "GTTAG":33462, "GTTTA":30101, "GTTTT":80666, "GTTTC":69501, "GTTTG":72467, "GTTCA":53970, "GTTCT":61010, "GTTCC":73212, "GTTCG":51328, "GTTGA":65984, "GTTGT":61870, "GTTGC":57636, "GTTGG":86310, "GTCAA":49063, "GTCAT":41180, "GTCAC":89111, "GTCAG":48016, "GTCTA":27380, "GTCTT":57793, "GTCTC":55899, "GTCTG":320329, "GTCCA":48545, "GTCCT":49545, "GTCCC":40535, "GTCCG":33078, "GTCGA":55038, "GTCGT":43556, "GTCGC":46649, "GTCGG":49114, "GTGAA":52989, "GTGAT":47592, "GTGAC":30107, "GTGAG":43460, "GTGTA":17743, "GTGTT":43185, "GTGTC":27832, "GTGTG":35827, "GTGCA":35509, "GTGCT":44577, "GTGCC":44280, "GTGCG":35083, "GTGGA":62898, "GTGGT":75322, "GTGGC":64577, "GTGGG":65622, "GCAAA":67083, "GCAAT":45558, "GCAAC":62720, "GCAAG":69978, "GCATA":34273, "GCATT":45501, "GCATC":59714, "GCATG":41916, "GCACA":464805, "GCACT":26865, "GCACC":70688, "GCACG":37062, "GCAGA":133960, "GCAGT":36626, "GCAGC":82568, "GCAGG":97268, "GCTAA":22916, "GCTAT":30108, "GCTAC":32161, "GCTAG":37711, "GCTTA":30356, "GCTTT":70059, "GCTTC":98856, "GCTTG":69311, "GCTCA":54529, "GCTCT":50651, "GCTCC":74028, "GCTCG":58020, "GCTGA":68790, "GCTGT":49947, "GCTGC":82882, "GCTGG":105582, "GCCAA":90383, "GCCAT":60907, "GCCAC":74343, "GCCAG":104181, "GCCTA":40980, "GCCTT":70280, "GCCTC":77656, "GCCTG":80189, "GCCCA":86494, "GCCCT":58984, "GCCCC":69892, "GCCCG":61188, "GCCGA":86406, "GCCGT":55465, "GCCGC":96965, "GCCGG":85801, "GCGAA":64109, "GCGAT":55042, "GCGAC":49950, "GCGAG":64303, "GCGTA":23876, "GCGTT":40905, "GCGTC":40347, "GCGTG":38656, "GCGCA":50820, "GCGCT":47940, "GCGCC":72512, "GCGCG":51142, "GCGGA":66560, "GCGGT":62528, "GCGGC":87514, "GCGGG":67746, "GGAAA":90443, "GGAAT":61850, "GGAAC":68617, "GGAAG":667208, "GGATA":48789, "GGATT":65666, "GGATC":55307, "GGATG":67349, "GGACA":47643, "GGACT":34890, "GGACC":44455, "GGACG":44441, "GGAGA":157037, "GGAGT":37992, "GGAGC":63809, "GGAGG":106442, "GGTAA":27438, "GGTAT":30606, "GGTAC":23300, "GGTAG":54978, "GGTTA":32715, "GGTTT":88282, "GGTTC":68618, "GGTTG":98365, "GGTCA":51786, "GGTCT":61059, "GGTCC":42460, "GGTCG":53275, "GGTGA":67694, "GGTGT":49596, "GGTGC":58572, "GGTGG":107990, "GGCAA":75760, "GGCAT":54310, "GGCAC":45521, "GGCAG":99416, "GGCTA":38881, "GGCTT":84610, "GGCTC":61278, "GGCTG":92196, "GGCCA":73731, "GGCCT":59199, "GGCCC":50165, "GGCCG":71778, "GGCGA":89185, "GGCGT":49667, "GGCGC":68381, "GGCGG":110915, "GGGAA":62843, "GGGAT":54483, "GGGAC":36825, "GGGAG":75010, "GGGTA":30183, "GGGTT":80484, "GGGTC":47704, "GGGTG":63368, "GGGCA":64552, "GGGCT":63858, "GGGCC":46699, "GGGCG":65384, "GGGGA":64229, "GGGGT":59257, "GGGGC":58516, "GGGGG":92461 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1196736, "total_bases": 73000896, "q20_bases": 71111050, "q30_bases": 68070374, "total_cycles": 61, "quality_curves": { "A":[39.3619,39.1024,39.0661,39.075,39.1151,39.1743,39.1415,38.919,39.1227,39.1335,39.1265,39.1282,39.1484,39.1512,39.1299,39.1163,39.1512,39.114,39.1462,39.1243,38.8434,39.1025,39.1268,39.1498,38.8692,39.1333,39.1397,38.8334,39.1225,38.8535,39.1137,39.1387,39.0889,38.9469,39.0312,39.0739,38.8746,39.0062,39.0045,38.777,38.9186,38.6047,38.7915,38.6883,38.5332,38.3229,37.9821,37.7882,37.8463,37.5107,37.2592,36.9151,36.7093,36.2287,35.9832,35.5918,35.2563,34.8981,34.5252,33.9874,33.6284], 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"CTTGA":63144, "CTTGT":56267, "CTTGC":57508, "CTTGG":73529, "CTCAA":60836, "CTCAT":47591, "CTCAC":40360, "CTCAG":48547, "CTCTA":28515, "CTCTT":66310, "CTCTC":58328, "CTCTG":52447, "CTCCA":80807, "CTCCT":121396, "CTCCC":71483, "CTCCG":65233, "CTCGA":56989, "CTCGT":44186, "CTCGC":55342, "CTCGG":56064, "CTGAA":60090, "CTGAT":51010, "CTGAC":39247, "CTGAG":46204, "CTGTA":19392, "CTGTT":63165, "CTGTC":37922, "CTGTG":39752, "CTGCA":57283, "CTGCT":99407, "CTGCC":80450, "CTGCG":53122, "CTGGA":74542, "CTGGT":69893, "CTGGC":71653, "CTGGG":71576, "CCAAA":102075, "CCAAT":51597, "CCAAC":105048, "CCAAG":75596, "CCATA":38390, "CCATT":52855, "CCATC":76113, "CCATG":54061, "CCACA":79783, "CCACT":41144, "CCACC":132411, "CCACG":54243, "CCAGA":75978, "CCAGT":49803, "CCAGC":109018, "CCAGG":69690, "CCTAA":27795, "CCTAT":31072, "CCTAC":35296, "CCTAG":26481, "CCTTA":24201, "CCTTT":69733, "CCTTC":91682, "CCTTG":73652, "CCTCA":66897, "CCTCT":64697, "CCTCC":122863, "CCTCG":67759, "CCTGA":59633, "CCTGT":57151, "CCTGC":105436, "CCTGG":70430, "CCCAA":96091, "CCCAT":56431, "CCCAC":85441, "CCCAG":79917, "CCCTA":30183, "CCCTT":52968, "CCCTC":67561, "CCCTG":58596, "CCCCA":88409, "CCCCT":58431, "CCCCC":61347, "CCCCG":63922, "CCCGA":56275, "CCCGT":35784, "CCCGC":74517, "CCCGG":61666, "CCGAA":63649, "CCGAT":52594, "CCGAC":53997, "CCGAG":57301, "CCGTA":25906, "CCGTT":42096, "CCGTC":49733, "CCGTG":38446, "CCGCA":60242, "CCGCT":57539, "CCGCC":120428, "CCGCG":57141, "CCGGA":55858, "CCGGT":52786, "CCGGC":84700, "CCGGG":57916, "CGAAA":61520, "CGAAT":42254, "CGAAC":50991, "CGAAG":66079, "CGATA":31904, "CGATT":48902, "CGATC":57746, "CGATG":64257, "CGACA":46763, "CGACT":39058, "CGACC":61116, "CGACG":55200, "CGAGA":56438, "CGAGT":30268, "CGAGC":54187, "CGAGG":59945, "CGTAA":22664, "CGTAT":20217, "CGTAC":17328, "CGTAG":26718, "CGTTA":15648, "CGTTT":43247, "CGTTC":44491, "CGTTG":45225, "CGTCA":39557, "CGTCT":41425, "CGTCC":42401, "CGTCG":52023, "CGTGA":36712, "CGTGT":22222, "CGTGC":31133, "CGTGG":46823, "CGCAA":46121, "CGCAT":34898, "CGCAC":37666, "CGCAG":50228, "CGCTA":20693, "CGCTT":49869, "CGCTC":47041, "CGCTG":59213, "CGCCA":78709, "CGCCT":78887, "CGCCC":72797, "CGCCG":91831, "CGCGA":47318, "CGCGT":29479, "CGCGC":49562, "CGCGG":54553, "CGGAA":55412, "CGGAT":45866, "CGGAC":32060, "CGGAG":56666, "CGGTA":26229, "CGGTT":53448, "CGGTC":49794, "CGGTG":58678, "CGGCA":66542, "CGGCT":67476, "CGGCC":70462, "CGGCG":86265, "CGGGA":48044, "CGGGT":45052, "CGGGC":52251, "CGGGG":53573, "GAAAA":103407, "GAAAT":65265, "GAAAC":69456, "GAAAG":70201, "GAATA":39576, "GAATT":50098, "GAATC":54507, "GAATG":48870, "GAACA":61228, "GAACT":48283, "GAACC":71811, "GAACG":45095, "GAAGA":102528, "GAAGT":47081, "GAAGC":86988, "GAAGG":74371, "GATAA":39314, "GATAT":38142, "GATAC":26693, "GATAG":33494, "GATTA":30941, "GATTT":69023, "GATTC":57144, "GATTG":52601, "GATCA":59233, "GATCT":55742, "GATCC":54900, "GATCG":52751, "GATGA":79143, "GATGT":44967, "GATGC":50386, "GATGG":69427, "GACAA":57226, "GACAT":38182, "GACAC":31558, "GACAG":36735, "GACTA":20388, "GACTT":47192, "GACTC":32198, "GACTG":33364, "GACCA":60737, "GACCT":47342, "GACCC":55294, "GACCG":52174, "GACGA":61089, "GACGT":28516, "GACGC":40861, "GACGG":47598, "GAGAA":90611, "GAGAT":56472, "GAGAC":53476, "GAGAG":49906, "GAGTA":20520, "GAGTT":41377, "GAGTC":29424, "GAGTG":24944, "GAGCA":61352, "GAGCT":42695, "GAGCC":56599, "GAGCG":40874, "GAGGA":102562, "GAGGT":49169, "GAGGC":64278, "GAGGG":50383, "GTAAA":23410, "GTAAT":21734, "GTAAC":20799, "GTAAG":16977, "GTATA":12983, "GTATT":28920, "GTATC":24717, "GTATG":23218, "GTACA":18953, "GTACT":18447, "GTACC":21684, "GTACG":17501, "GTAGA":29378, "GTAGT":21432, "GTAGC":28213, "GTAGG":26741, "GTTAA":16441, "GTTAT":25274, "GTTAC":23565, "GTTAG":17657, "GTTTA":23989, "GTTTT":75471, "GTTTC":64870, "GTTTG":68005, "GTTCA":48173, "GTTCT":57292, "GTTCC":67380, "GTTCG":47353, "GTTGA":59503, "GTTGT":58124, "GTTGC":54043, "GTTGG":80503, "GTCAA":43989, "GTCAT":38472, "GTCAC":30231, "GTCAG":34554, "GTCTA":21342, "GTCTT":54047, "GTCTC":53246, "GTCTG":43889, "GTCCA":42518, "GTCCT":45987, "GTCCC":38339, "GTCCG":30855, "GTCGA":47870, "GTCGT":40222, "GTCGC":43125, "GTCGG":45012, "GTGAA":46351, "GTGAT":43957, "GTGAC":27812, "GTGAG":33970, "GTGTA":13968, "GTGTT":40065, "GTGTC":25549, "GTGTG":33182, "GTGCA":30297, "GTGCT":41202, "GTGCC":41232, "GTGCG":32207, "GTGGA":54830, "GTGGT":69793, "GTGGC":60212, "GTGGG":60472, "GCAAA":59370, "GCAAT":42707, "GCAAC":58138, "GCAAG":53367, "GCATA":27686, "GCATT":41884, "GCATC":50038, "GCATG":38806, "GCACA":37326, "GCACT":24672, "GCACC":64137, "GCACG":33489, "GCAGA":60754, "GCAGT":33929, "GCAGC":75784, "GCAGG":88372, "GCTAA":19705, "GCTAT":28205, "GCTAC":29269, "GCTAG":18205, "GCTTA":23787, "GCTTT":65615, "GCTTC":91985, "GCTTG":65638, "GCTCA":47958, "GCTCT":46527, "GCTCC":69113, "GCTCG":52959, "GCTGA":60979, "GCTGT":46019, "GCTGC":76309, "GCTGG":97738, "GCCAA":80113, "GCCAT":57129, "GCCAC":68448, "GCCAG":71518, "GCCTA":32004, "GCCTT":65760, "GCCTC":72390, "GCCTG":73423, "GCCCA":74391, "GCCCT":54783, "GCCCC":64046, "GCCCG":55354, "GCCGA":74395, "GCCGT":51391, "GCCGC":88072, "GCCGG":78033, "GCGAA":54389, "GCGAT":50932, "GCGAC":46012, "GCGAG":48114, "GCGTA":18779, "GCGTT":37629, "GCGTC":37238, "GCGTG":34963, "GCGCA":42309, "GCGCT":44154, "GCGCC":66923, "GCGCG":46700, "GCGGA":55871, "GCGGT":57714, "GCGGC":80718, "GCGGG":61865, "GGAAA":80296, "GGAAT":57671, "GGAAC":63327, "GGAAG":73056, "GGATA":39159, "GGATT":62042, "GGATC":51224, "GGATG":62706, "GGACA":40252, "GGACT":32224, "GGACC":41306, "GGACG":40155, "GGAGA":90325, "GGAGT":35133, "GGAGC":58628, "GGAGG":96584, "GGTAA":23826, "GGTAT":28311, "GGTAC":21422, "GGTAG":31482, "GGTTA":25577, "GGTTT":82711, "GGTTC":64146, "GGTTG":91341, "GGTCA":44500, "GGTCT":56640, "GGTCC":39713, "GGTCG":48819, "GGTGA":59073, "GGTGT":45835, "GGTGC":53762, "GGTGG":99270, "GGCAA":66369, "GGCAT":50584, "GGCAC":41874, "GGCAG":68007, "GGCTA":30357, "GGCTT":79202, "GGCTC":57053, "GGCTG":85845, "GGCCA":61426, "GGCCT":54665, "GGCCC":45799, "GGCCG":65261, "GGCGA":76805, "GGCGT":45952, "GGCGC":62794, "GGCGG":101342, "GGGAA":54847, "GGGAT":50645, "GGGAC":33825, "GGGAG":55307, "GGGTA":23155, "GGGTT":75248, "GGGTC":44410, "GGGTG":57450, "GGGCA":54003, "GGGCT":59858, "GGGCC":43234, "GGGCG":59632, "GGGGA":54987, "GGGGT":53751, "GGGGC":53922, "GGGGG":43283 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-17A_S96_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-17A_S96_R2_001.fastq.gz -o AM-AL-17A.trim.R1.fastq.gz -O AM-AL-17A.trim.R2.fastq.gz -m --merged_out AM-AL-17A.trim.merged.fastq.gz " }