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"CGCGG":73255, "CGGAA":624069, "CGGAT":59187, "CGGAC":44316, "CGGAG":89038, "CGGTA":41048, "CGGTT":70076, "CGGTC":67180, "CGGTG":79418, "CGGCA":94834, "CGGCT":90970, "CGGCC":93182, "CGGCG":116882, "CGGGA":68143, "CGGGT":59828, "CGGGC":69464, "CGGGG":71113, "GAAAA":124295, "GAAAT":76217, "GAAAC":83988, "GAAAG":97425, "GAATA":50184, "GAATT":59849, "GAATC":67139, "GAATG":60111, "GAACA":83480, "GAACT":220657, "GAACC":91075, "GAACG":61768, "GAAGA":675887, "GAAGT":60403, "GAAGC":108561, "GAAGG":96654, "GATAA":47899, "GATAT":47432, "GATAC":35108, "GATAG":58505, "GATTA":40412, "GATTT":81687, "GATTC":70704, "GATTG":67193, "GATCA":84256, "GATCT":72881, "GATCC":76222, "GATCG":690613, "GATGA":104182, "GATGT":56106, "GATGC":65797, "GATGG":88495, "GACAA":74298, "GACAT":48413, "GACAC":41909, "GACAG":62166, "GACTA":29248, "GACTT":58663, "GACTC":41758, "GACTG":45419, "GACCA":83330, "GACCT":61238, "GACCC":70454, "GACCG":67466, "GACGA":83694, "GACGT":35945, "GACGC":53915, "GACGG":62625, "GAGAA":116397, "GAGAT":218078, "GAGAC":67044, "GAGAG":75619, "GAGTA":28380, "GAGTT":52646, "GAGTC":38205, "GAGTG":32386, "GAGCA":505165, "GAGCT":55212, "GAGCC":70919, "GAGCG":56662, "GAGGA":129890, "GAGGT":62620, "GAGGC":82677, "GAGGG":64474, "GTAAA":28342, "GTAAT":26082, "GTAAC":26632, "GTAAG":24620, "GTATA":17183, "GTATT":36047, "GTATC":32845, "GTATG":29489, "GTACA":24976, "GTACT":24347, "GTACC":28201, "GTACG":23657, "GTAGA":92376, "GTAGT":26867, "GTAGC":35477, "GTAGG":34562, "GTTAA":19839, "GTTAT":29873, "GTTAC":29995, "GTTAG":35117, "GTTTA":31649, "GTTTT":91809, "GTTTC":81737, "GTTTG":88207, "GTTCA":63169, "GTTCT":74830, "GTTCC":85399, "GTTCG":61390, "GTTGA":75885, "GTTGT":76939, "GTTGC":68690, "GTTGG":102931, "GTCAA":57330, "GTCAT":49753, "GTCAC":86214, "GTCAG":54723, "GTCTA":31113, "GTCTT":71366, "GTCTC":69246, "GTCTG":287958, "GTCCA":57813, "GTCCT":60489, "GTCCC":48293, "GTCCG":42992, "GTCGA":67429, "GTCGT":56043, "GTCGC":57857, "GTCGG":61946, "GTGAA":60750, "GTGAT":58234, "GTGAC":37376, "GTGAG":50909, "GTGTA":21089, "GTGTT":52189, "GTGTC":34627, "GTGTG":44578, "GTGCA":38678, "GTGCT":54135, "GTGCC":52942, "GTGCG":44474, "GTGGA":71142, "GTGGT":93643, "GTGGC":77260, "GTGGG":81912, "GCAAA":77373, "GCAAT":53638, "GCAAC":75162, "GCAAG":79643, "GCATA":38295, "GCATT":50410, "GCATC":67217, "GCATG":49778, "GCACA":427901, "GCACT":40538, "GCACC":87912, "GCACG":43778, "GCAGA":142010, "GCAGT":42691, "GCAGC":96905, "GCAGG":112273, "GCTAA":24281, "GCTAT":36416, "GCTAC":38503, "GCTAG":40084, "GCTTA":34884, "GCTTT":82504, "GCTTC":119140, "GCTTG":84718, "GCTCA":65897, "GCTCT":60812, "GCTCC":92045, "GCTCG":70072, "GCTGA":82620, "GCTGT":60512, "GCTGC":99545, "GCTGG":125223, "GCCAA":104344, "GCCAT":71995, "GCCAC":91650, "GCCAG":118931, "GCCTA":47674, "GCCTT":83436, "GCCTC":94543, "GCCTG":96304, "GCCCA":100887, "GCCCT":72217, "GCCCC":85057, "GCCCG":75920, "GCCGA":101659, "GCCGT":68559, "GCCGC":117527, "GCCGG":104487, "GCGAA":74188, "GCGAT":66520, "GCGAC":61724, "GCGAG":74635, "GCGTA":28652, "GCGTT":50399, "GCGTC":50593, "GCGTG":47479, "GCGCA":62260, "GCGCT":60989, "GCGCC":88638, "GCGCG":64682, "GCGGA":80069, "GCGGT":76589, "GCGGC":106994, "GCGGG":82654, "GGAAA":101354, "GGAAT":71808, "GGAAC":80238, "GGAAG":627811, "GGATA":53365, "GGATT":76030, "GGATC":68806, "GGATG":80625, "GGACA":55301, "GGACT":40728, "GGACC":52738, "GGACG":53296, "GGAGA":171123, "GGAGT":43653, "GGAGC":75363, "GGAGG":121670, "GGTAA":30898, "GGTAT":35663, "GGTAC":27697, "GGTAG":62266, "GGTTA":36807, "GGTTT":101306, "GGTTC":81335, "GGTTG":118128, "GGTCA":60897, "GGTCT":73438, "GGTCC":51936, "GGTCG":67271, "GGTGA":82076, "GGTGT":62193, "GGTGC":68863, "GGTGG":131783, "GGCAA":89070, "GGCAT":65417, "GGCAC":54187, "GGCAG":113039, "GGCTA":46253, "GGCTT":102907, "GGCTC":71744, "GGCTG":112141, "GGCCA":85964, "GGCCT":71053, "GGCCC":59941, "GGCCG":86131, "GGCGA":107390, "GGCGT":62212, "GGCGC":84203, "GGCGG":134219, "GGGAA":73218, "GGGAT":65174, "GGGAC":44992, "GGGAG":88139, "GGGTA":35290, "GGGTT":95496, "GGGTC":59199, "GGGTG":77385, "GGGCA":75817, "GGGCT":77196, "GGGCC":55465, "GGGCG":81227, "GGGGA":75032, "GGGGT":72833, "GGGGC":70676, "GGGGG":100149 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1350444, "total_bases": 82377084, "q20_bases": 80382009, "q30_bases": 76932612, "total_cycles": 61, "quality_curves": { "A":[39.2192,39.1488,39.0301,39.0286,39.057,38.9808,39.0485,38.943,39.0826,39.0817,39.1047,39.1037,39.1165,39.101,39.0848,39.0646,39.0913,39.105,39.1188,39.0923,38.8279,39.0574,39.078,39.0957,38.8479,39.0532,39.076,38.8083,39.0202,38.916,39.0658,39.0842,39.0093,38.8903,39.0459,39.0014,39.0272,38.9936,38.9409,38.9395,38.8858,38.8122,38.7465,38.6567,38.5345,38.354,38.0385,37.8616,37.9837,37.6411,37.3861,37.1159,37.0852,36.4562,36.2906,35.9158,35.6606,35.3586,35.1936,34.5952,34.5664], 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"CCTGG":80604, "CCCAA":107515, "CCCAT":63076, "CCCAC":101301, "CCCAG":94083, "CCCTA":32663, "CCCTT":58738, "CCCTC":76822, "CCCTG":67932, "CCCCA":105213, "CCCCT":66399, "CCCCC":72946, "CCCCG":74607, "CCCGA":66581, "CCCGT":42336, "CCCGC":87586, "CCCGG":71890, "CCGAA":70776, "CCGAT":60070, "CCGAC":62695, "CCGAG":66797, "CCGTA":29228, "CCGTT":48900, "CCGTC":60450, "CCGTG":44145, "CCGCA":70080, "CCGCT":65450, "CCGCC":140591, "CCGCG":67169, "CCGGA":64775, "CCGGT":64525, "CCGGC":98568, "CCGGG":66489, "CGAAA":67014, "CGAAT":46240, "CGAAC":58937, "CGAAG":76457, "CGATA":35304, "CGATT":53833, "CGATC":67208, "CGATG":73608, "CGACA":54780, "CGACT":45216, "CGACC":70917, "CGACG":64588, "CGAGA":65330, "CGAGT":35254, "CGAGC":61641, "CGAGG":68304, "CGTAA":25254, "CGTAT":23410, "CGTAC":20867, "CGTAG":29519, "CGTTA":17168, "CGTTT":48813, "CGTTC":52102, "CGTTG":52985, "CGTCA":46080, "CGTCT":50050, "CGTCC":49563, "CGTCG":61758, "CGTGA":40872, "CGTGT":25611, "CGTGC":35040, "CGTGG":53987, "CGCAA":51893, "CGCAT":40408, "CGCAC":45622, "CGCAG":56505, "CGCTA":22526, "CGCTT":56633, "CGCTC":57099, "CGCTG":67413, "CGCCA":91356, "CGCCT":90958, "CGCCC":86561, "CGCCG":106457, "CGCGA":53980, "CGCGT":34253, "CGCGC":59198, "CGCGG":63426, "CGGAA":64110, "CGGAT":51959, "CGGAC":37894, "CGGAG":63783, "CGGTA":30679, "CGGTT":62569, "CGGTC":59227, "CGGTG":69092, "CGGCA":75794, "CGGCT":80620, "CGGCC":80878, "CGGCG":101216, "CGGGA":56221, "CGGGT":52462, "CGGGC":60562, "CGGGG":61644, "GAAAA":106249, "GAAAT":67113, "GAAAC":75235, "GAAAG":75893, "GAATA":41979, "GAATT":53029, "GAATC":59855, "GAATG":53498, "GAACA":67905, "GAACT":55003, "GAACC":79889, "GAACG":52331, "GAAGA":115289, "GAAGT":52911, "GAAGC":96430, "GAAGG":84647, "GATAA":41593, "GATAT":42183, "GATAC":31105, "GATAG":35254, "GATTA":33206, "GATTT":72399, "GATTC":62947, "GATTG":59914, "GATCA":69298, "GATCT":63403, "GATCC":65473, "GATCG":61709, "GATGA":89951, "GATGT":50446, "GATGC":58279, "GATGG":78657, "GACAA":64154, "GACAT":41630, "GACAC":36530, "GACAG":41777, "GACTA":22492, "GACTT":52665, "GACTC":36214, "GACTG":38728, "GACCA":69351, "GACCT":53296, "GACCC":62278, "GACCG":59066, "GACGA":71265, "GACGT":30923, "GACGC":46362, "GACGG":55075, "GAGAA":99943, "GAGAT":65354, "GAGAC":59436, "GAGAG":56192, "GAGTA":22282, "GAGTT":46262, "GAGTC":33389, "GAGTG":28291, "GAGCA":68463, "GAGCT":47965, "GAGCC":62318, "GAGCG":48477, "GAGGA":110670, "GAGGT":54704, "GAGGC":72846, "GAGGG":56550, "GTAAA":24452, "GTAAT":22990, "GTAAC":22846, "GTAAG":17705, "GTATA":13767, "GTATT":31833, "GTATC":28648, "GTATG":25821, "GTACA":20384, "GTACT":21156, "GTACC":24584, "GTACG":20599, "GTAGA":32012, "GTAGT":23567, "GTAGC":31570, "GTAGG":30134, "GTTAA":16994, "GTTAT":26292, "GTTAC":26655, "GTTAG":19499, "GTTTA":24705, "GTTTT":81100, "GTTTC":71878, "GTTTG":77783, "GTTCA":53114, "GTTCT":66202, "GTTCC":75624, "GTTCG":54154, "GTTGA":65208, "GTTGT":68493, "GTTGC":61092, "GTTGG":91800, "GTCAA":48728, "GTCAT":44138, "GTCAC":35144, "GTCAG":38463, "GTCTA":23064, "GTCTT":62868, "GTCTC":62574, "GTCTG":50200, "GTCCA":48219, "GTCCT":53319, "GTCCC":43565, "GTCCG":36114, "GTCGA":55967, "GTCGT":49122, "GTCGC":50626, "GTCGG":53808, "GTGAA":50556, "GTGAT":50511, "GTGAC":32430, "GTGAG":38374, "GTGTA":16139, "GTGTT":45808, "GTGTC":29947, "GTGTG":39337, "GTGCA":31410, "GTGCT":47308, "GTGCC":46815, "GTGCG":38373, "GTGGA":60041, "GTGGT":83074, "GTGGC":68417, "GTGGG":71522, "GCAAA":63987, "GCAAT":47394, "GCAAC":65730, "GCAAG":59012, "GCATA":29699, "GCATT":44574, "GCATC":58437, "GCATG":43356, "GCACA":43260, "GCACT":28155, "GCACC":75456, "GCACG":36892, "GCAGA":67780, "GCAGT":37436, "GCAGC":84971, "GCAGG":97845, "GCTAA":19966, "GCTAT":31640, "GCTAC":33496, "GCTAG":20506, "GCTTA":26299, "GCTTT":72831, "GCTTC":105769, "GCTTG":75546, "GCTCA":54785, "GCTCT":52540, "GCTCC":81771, "GCTCG":61515, "GCTGA":69875, "GCTGT":52437, "GCTGC":88265, "GCTGG":110506, "GCCAA":88857, "GCCAT":63447, "GCCAC":80305, "GCCAG":81966, "GCCTA":35761, "GCCTT":73618, "GCCTC":84495, "GCCTG":83744, "GCCCA":83442, "GCCCT":62795, "GCCCC":74478, "GCCCG":65559, "GCCGA":83974, "GCCGT":60440, "GCCGC":101819, "GCCGG":90614, "GCGAA":60817, "GCGAT":57647, "GCGAC":53507, "GCGAG":54596, "GCGTA":21616, "GCGTT":43641, "GCGTC":43432, "GCGTG":39927, "GCGCA":49231, "GCGCT":52550, "GCGCC":77841, "GCGCG":55106, "GCGGA":64855, "GCGGT":67923, "GCGGC":94221, "GCGGG":71850, "GGAAA":83955, "GGAAT":63813, "GGAAC":70583, "GGAAG":81822, "GGATA":41718, "GGATT":68405, "GGATC":60182, "GGATG":71201, "GGACA":44975, "GGACT":35845, "GGACC":46616, "GGACG":45544, "GGAGA":100306, "GGAGT":38168, "GGAGC":66244, "GGAGG":106191, "GGTAA":25502, "GGTAT":31409, "GGTAC":23841, "GGTAG":36172, "GGTTA":28101, "GGTTT":90065, "GGTTC":72429, "GGTTG":105122, "GGTCA":50248, "GGTCT":64817, "GGTCC":46048, "GGTCG":58674, "GGTGA":67566, "GGTGT":55223, "GGTGC":60266, "GGTGG":116976, "GGCAA":74308, "GGCAT":57504, "GGCAC":46974, "GGCAG":77334, "GGCTA":35200, "GGCTT":90440, "GGCTC":63361, "GGCTG":98979, "GGCCA":69186, "GGCCT":61586, "GGCCC":52036, "GGCCG":73786, "GGCGA":88519, "GGCGT":53854, "GGCGC":72583, "GGCGG":118135, "GGGAA":60976, "GGGAT":58048, "GGGAC":39162, "GGGAG":63589, "GGGTA":26170, "GGGTT":84702, "GGGTC":52262, "GGGTG":67037, "GGGCA":60771, "GGGCT":67969, "GGGCC":48364, "GGGCG":70344, "GGGGA":61808, "GGGGT":63679, "GGGGC":61891, "GGGGG":50313 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-16A_S93_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-16A_S93_R2_001.fastq.gz -o AM-AL-16A.trim.R1.fastq.gz -O AM-AL-16A.trim.R2.fastq.gz -m --merged_out AM-AL-16A.trim.merged.fastq.gz " }