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"CGGAT":82935, "CGGAC":32425, "CGGAG":75847, "CGGTA":34997, "CGGTT":56196, "CGGTC":49794, "CGGTG":60924, "CGGCA":72633, "CGGCT":71881, "CGGCC":72045, "CGGCG":88684, "CGGGA":53581, "CGGGT":47836, "CGGGC":54267, "CGGGG":58354, "GAAAA":105669, "GAAAT":61150, "GAAAC":66638, "GAAAG":82463, "GAATA":41319, "GAATT":46151, "GAATC":49464, "GAATG":42951, "GAACA":64344, "GAACT":284050, "GAACC":71125, "GAACG":43370, "GAAGA":747901, "GAAGT":48071, "GAAGC":86494, "GAAGG":79909, "GATAA":43500, "GATAT":36867, "GATAC":27985, "GATAG":54074, "GATTA":34535, "GATTT":64940, "GATTC":52269, "GATTG":51704, "GATCA":84204, "GATCT":51629, "GATCC":51552, "GATCG":748103, "GATGA":79166, "GATGT":44946, "GATGC":51240, "GATGG":73018, "GACAA":58751, "GACAT":38560, "GACAC":31660, "GACAG":52190, "GACTA":24994, "GACTT":47008, "GACTC":33240, "GACTG":33708, "GACCA":65493, "GACCT":48079, "GACCC":57999, "GACCG":49376, "GACGA":63456, "GACGT":29223, "GACGC":41809, "GACGG":47284, "GAGAA":92226, "GAGAT":203862, "GAGAC":54542, "GAGAG":60017, "GAGTA":24110, "GAGTT":43250, "GAGTC":32037, "GAGTG":25153, "GAGCA":586193, "GAGCT":40789, "GAGCC":57157, "GAGCG":41933, "GAGGA":108980, "GAGGT":53879, "GAGGC":67410, "GAGGG":54918, "GTAAA":24921, "GTAAT":21493, "GTAAC":22121, "GTAAG":21975, "GTATA":15531, "GTATT":30689, "GTATC":25698, "GTATG":24547, "GTACA":20332, "GTACT":18999, "GTACC":23595, "GTACG":19151, "GTAGA":90670, "GTAGT":22090, "GTAGC":27469, "GTAGG":28974, "GTTAA":19799, "GTTAT":27619, "GTTAC":26532, "GTTAG":34388, "GTTTA":29656, "GTTTT":82162, "GTTTC":67027, "GTTTG":73085, "GTTCA":50717, "GTTCT":61316, "GTTCC":70702, "GTTCG":46731, "GTTGA":62209, "GTTGT":64179, "GTTGC":56363, "GTTGG":91166, "GTCAA":48262, "GTCAT":38781, "GTCAC":122838, "GTCAG":44586, "GTCTA":26446, "GTCTT":58308, "GTCTC":56553, "GTCTG":373484, "GTCCA":46446, "GTCCT":47768, "GTCCC":39864, "GTCCG":31667, "GTCGA":48402, "GTCGT":42534, "GTCGC":43918, "GTCGG":47397, "GTGAA":49603, "GTGAT":45339, "GTGAC":28621, "GTGAG":40855, "GTGTA":17806, "GTGTT":43941, "GTGTC":25730, "GTGTG":34811, "GTGCA":33273, "GTGCT":43673, "GTGCC":42481, "GTGCG":33176, "GTGGA":59375, "GTGGT":75670, "GTGGC":60394, "GTGGG":67603, "GCAAA":63612, "GCAAT":41059, "GCAAC":60564, "GCAAG":66222, "GCATA":32067, "GCATT":39005, "GCATC":50507, "GCATG":37621, "GCACA":515588, "GCACT":26520, "GCACC":70839, "GCACG":33616, "GCAGA":127892, "GCAGT":33732, "GCAGC":73459, "GCAGG":89329, "GCTAA":23272, "GCTAT":30743, "GCTAC":30715, "GCTAG":37918, "GCTTA":30474, "GCTTT":69211, "GCTTC":95383, "GCTTG":67239, "GCTCA":49473, "GCTCT":47116, "GCTCC":71458, "GCTCG":51706, "GCTGA":64947, "GCTGT":49693, "GCTGC":76156, "GCTGG":103068, "GCCAA":86755, "GCCAT":58667, "GCCAC":70636, "GCCAG":99490, "GCCTA":40646, "GCCTT":68670, "GCCTC":77401, "GCCTG":76685, "GCCCA":84337, "GCCCT":58956, "GCCCC":70055, "GCCCG":59660, "GCCGA":79024, "GCCGT":54101, "GCCGC":91905, "GCCGG":80030, "GCGAA":58439, "GCGAT":49520, "GCGAC":45138, "GCGAG":57107, "GCGTA":23355, "GCGTT":39455, "GCGTC":37752, "GCGTG":34579, "GCGCA":46930, "GCGCT":45392, "GCGCC":66650, "GCGCG":47140, "GCGGA":63058, "GCGGT":60027, "GCGGC":82886, "GCGGG":67390, "GGAAA":82763, "GGAAT":53621, "GGAAC":61958, "GGAAG":706619, "GGATA":47177, "GGATT":58324, "GGATC":81870, "GGATG":64805, "GGACA":45513, "GGACT":31594, "GGACC":40929, "GGACG":41177, "GGAGA":154562, "GGAGT":36174, "GGAGC":60198, "GGAGG":107271, "GGTAA":27190, "GGTAT":29646, "GGTAC":23957, "GGTAG":56703, "GGTTA":33865, "GGTTT":89466, "GGTTC":65609, "GGTTG":100735, "GGTCA":48931, "GGTCT":59271, "GGTCC":39086, "GGTCG":50559, "GGTGA":68243, "GGTGT":50428, "GGTGC":56516, "GGTGG":108201, "GGCAA":70963, "GGCAT":51015, "GGCAC":42873, "GGCAG":92510, "GGCTA":42105, "GGCTT":81465, "GGCTC":56307, "GGCTG":91196, "GGCCA":69089, "GGCCT":56477, "GGCCC":49927, "GGCCG":67423, "GGCGA":81967, "GGCGT":49033, "GGCGC":63025, "GGCGG":107926, "GGGAA":60678, "GGGAT":51799, "GGGAC":35241, "GGGAG":77809, "GGGTA":31460, "GGGTT":84692, "GGGTC":47763, "GGGTG":66516, "GGGCA":61500, "GGGCT":61579, "GGGCC":46100, "GGGCG":63332, "GGGGA":63592, "GGGGT":65822, "GGGGC":57300, "GGGGG":190627 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1183886, "total_bases": 72217046, "q20_bases": 69821229, "q30_bases": 66480612, "total_cycles": 61, "quality_curves": { "A":[39.3385,39.1929,38.9348,38.8652,38.9165,39.1444,39.0969,38.8886,39.1406,39.1013,39.1087,39.1006,39.1712,39.158,39.1455,39.1236,39.1497,39.1192,39.1655,39.14,38.3209,39.0939,39.1535,39.1569,38.4076,39.0964,39.1252,38.3157,39.0064,38.5835,39.1355,39.1435,39.082,38.7648,38.4705,38.3627,39.0168,39.0106,38.9264,38.7841,38.765,37.8639,38.4845,38.356,38.1304,37.8106,37.1589,36.8674,37.1744,36.8386,36.5351,36.1892,35.9157,35.3325,35.0846,34.6182,34.3399,33.9618,33.614,33.0135,32.7398], 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"CCTGG":62563, "CCCAA":93429, "CCCAT":51978, "CCCAC":80845, "CCCAG":71645, "CCCTA":28702, "CCCTT":51070, "CCCTC":65681, "CCCTG":53504, "CCCCA":89142, "CCCCT":57541, "CCCCC":62552, "CCCCG":58944, "CCCGA":48956, "CCCGT":33960, "CCCGC":68718, "CCCGG":54942, "CCGAA":53610, "CCGAT":43114, "CCGAC":45522, "CCGAG":46833, "CCGTA":22568, "CCGTT":39474, "CCGTC":45243, "CCGTG":32336, "CCGCA":53412, "CCGCT":51914, "CCGCC":108021, "CCGCG":45728, "CCGGA":48792, "CCGGT":48311, "CCGGC":71169, "CCGGG":49503, "CGAAA":52086, "CGAAT":32542, "CGAAC":42413, "CGAAG":55009, "CGATA":27742, "CGATT":40304, "CGATC":41886, "CGATG":53147, "CGACA":38241, "CGACT":34622, "CGACC":49883, "CGACG":45059, "CGAGA":44112, "CGAGT":27961, "CGAGC":41607, "CGAGG":50184, "CGTAA":20181, "CGTAT":19030, "CGTAC":15770, "CGTAG":21677, "CGTTA":14928, "CGTTT":39177, "CGTTC":39038, "CGTTG":39833, "CGTCA":34138, "CGTCT":38388, "CGTCC":37880, "CGTCG":42221, "CGTGA":28314, "CGTGT":19164, "CGTGC":25903, "CGTGG":39550, "CGCAA":38385, "CGCAT":28747, "CGCAC":32517, "CGCAG":42370, "CGCTA":17512, "CGCTT":46680, "CGCTC":40498, "CGCTG":49615, "CGCCA":68175, "CGCCT":70586, "CGCCC":64551, "CGCCG":76969, "CGCGA":35827, "CGCGT":23173, "CGCGC":40470, "CGCGG":43962, "CGGAA":46157, "CGGAT":36219, "CGGAC":26204, "CGGAG":48567, "CGGTA":24022, "CGGTT":48665, "CGGTC":41372, "CGGTG":50120, "CGGCA":53106, "CGGCT":61293, "CGGCC":59116, "CGGCG":70715, "CGGGA":41726, "CGGGT":40505, "CGGGC":44093, "CGGGG":47748, "GAAAA":90562, "GAAAT":53326, "GAAAC":57923, "GAAAG":59927, "GAATA":33139, "GAATT":40411, "GAATC":42817, "GAATG":37103, "GAACA":51084, "GAACT":41338, "GAACC":59865, "GAACG":36295, "GAAGA":87090, "GAAGT":40998, "GAAGC":72769, "GAAGG":67292, "GATAA":36540, "GATAT":32285, "GATAC":23740, "GATAG":28701, "GATTA":27220, "GATTT":57290, "GATTC":45300, "GATTG":44385, "GATCA":44922, "GATCT":44497, "GATCC":43728, "GATCG":38154, "GATGA":65594, "GATGT":39198, "GATGC":43624, "GATGG":62778, "GACAA":48593, "GACAT":32457, "GACAC":26956, "GACAG":31562, "GACTA":18470, "GACTT":41743, "GACTC":28021, "GACTG":28413, "GACCA":51856, "GACCT":40427, "GACCC":49181, "GACCG":40469, "GACGA":50814, "GACGT":24229, "GACGC":34313, "GACGG":39465, "GAGAA":75895, "GAGAT":47413, "GAGAC":46099, "GAGAG":41198, "GAGTA":17820, "GAGTT":36982, "GAGTC":27479, "GAGTG":21076, "GAGCA":49240, "GAGCT":34034, "GAGCC":47269, "GAGCG":33801, "GAGGA":87997, "GAGGT":45369, "GAGGC":56176, "GAGGG":46082, "GTAAA":20935, "GTAAT":18364, "GTAAC":18719, "GTAAG":14459, "GTATA":11861, "GTATT":26579, "GTATC":22188, "GTATG":21257, "GTACA":15972, "GTACT":16005, "GTACC":20004, "GTACG":16091, "GTAGA":25749, "GTAGT":19273, "GTAGC":23498, "GTAGG":24881, "GTTAA":16716, "GTTAT":24410, "GTTAC":23089, "GTTAG":15613, "GTTTA":21857, "GTTTT":73394, "GTTTC":58851, "GTTTG":64772, "GTTCA":41378, "GTTCT":54443, "GTTCC":61428, "GTTCG":40075, "GTTGA":51831, "GTTGT":57180, "GTTGC":48567, "GTTGG":80249, "GTCAA":38926, "GTCAT":33358, "GTCAC":26500, "GTCAG":28416, "GTCTA":18960, "GTCTT":51139, "GTCTC":50801, "GTCTG":38980, "GTCCA":37258, "GTCCT":41383, "GTCCC":34502, "GTCCG":26334, "GTCGA":38057, "GTCGT":35508, "GTCGC":36381, "GTCGG":38594, "GTGAA":39448, "GTGAT":38386, "GTGAC":23975, "GTGAG":28461, "GTGTA":13120, "GTGTT":38377, "GTGTC":21664, "GTGTG":29855, "GTGCA":25853, "GTGCT":36783, "GTGCC":35657, "GTGCG":27577, "GTGGA":46985, "GTGGT":65557, "GTGGC":51135, "GTGGG":57198, "GCAAA":50799, "GCAAT":34679, "GCAAC":51300, "GCAAG":44548, "GCATA":23350, "GCATT":33724, "GCATC":42466, "GCATG":31673, "GCACA":31212, "GCACT":22226, "GCACC":59063, "GCACG":26716, "GCAGA":51977, "GCAGT":28314, "GCAGC":61195, "GCAGG":73261, "GCTAA":18601, "GCTAT":26130, "GCTAC":26007, "GCTAG":16369, "GCTTA":21594, "GCTTT":60997, "GCTTC":83504, "GCTTG":58456, "GCTCA":39533, "GCTCT":40796, "GCTCC":61463, "GCTCG":42654, "GCTGA":52363, "GCTGT":42464, "GCTGC":64453, "GCTGG":86814, "GCCAA":69041, "GCCAT":50289, "GCCAC":59113, "GCCAG":60012, "GCCTA":29053, "GCCTT":59917, "GCCTC":66999, "GCCTG":64545, "GCCCA":65617, "GCCCT":50172, "GCCCC":58463, "GCCCG":47956, "GCCGA":60531, "GCCGT":45393, "GCCGC":74901, "GCCGG":64758, "GCGAA":44840, "GCGAT":41082, "GCGAC":36847, "GCGAG":37637, "GCGTA":15985, "GCGTT":33483, "GCGTC":30727, "GCGTG":28067, "GCGCA":33850, "GCGCT":37095, "GCGCC":54768, "GCGCG":37387, "GCGGA":46838, "GCGGT":50451, "GCGGC":67545, "GCGGG":55450, "GGAAA":67431, "GGAAT":46343, "GGAAC":52101, "GGAAG":63653, "GGATA":34859, "GGATT":51151, "GGATC":41149, "GGATG":55402, "GGACA":35218, "GGACT":26760, "GGACC":34243, "GGACG":33030, "GGAGA":81299, "GGAGT":30437, "GGAGC":49955, "GGAGG":88039, "GGTAA":21191, "GGTAT":25498, "GGTAC":20008, "GGTAG":29116, "GGTTA":23902, "GGTTT":79727, "GGTTC":57641, "GGTTG":88654, "GGTCA":37929, "GGTCT":51555, "GGTCC":33090, "GGTCG":41353, "GGTGA":54059, "GGTGT":43880, "GGTGC":47226, "GGTGG":91943, "GGCAA":55415, "GGCAT":43511, "GGCAC":35237, "GGCAG":56546, "GGCTA":30048, "GGCTT":70998, "GGCTC":48142, "GGCTG":77768, "GGCCA":51000, "GGCCT":47772, "GGCCC":40976, "GGCCG":53758, "GGCGA":62966, "GGCGT":40524, "GGCGC":50502, "GGCGG":88373, "GGGAA":47772, "GGGAT":44255, "GGGAC":29291, "GGGAG":52412, "GGGTA":22109, "GGGTT":74794, "GGGTC":40935, "GGGTG":55965, "GGGCA":46088, "GGGCT":53153, "GGGCC":37875, "GGGCG":51366, "GGGGA":49701, "GGGGT":56058, "GGGGC":47770, "GGGGG":42301 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-15C_S92_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-15C_S92_R2_001.fastq.gz -o AM-AL-15C.trim.R1.fastq.gz -O AM-AL-15C.trim.R2.fastq.gz -m --merged_out AM-AL-15C.trim.merged.fastq.gz " }