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"CTCGC":53201, "CTCGG":55306, "CTGAA":271239, "CTGAT":50363, "CTGAC":38668, "CTGAG":53991, "CTGTA":23861, "CTGTT":65314, "CTGTC":39477, "CTGTG":40546, "CTGCA":61157, "CTGCT":93522, "CTGCC":78384, "CTGCG":51823, "CTGGA":79107, "CTGGT":70356, "CTGGC":71910, "CTGGG":79230, "CCAAA":110326, "CCAAT":52888, "CCAAC":106544, "CCAAG":90879, "CCATA":46751, "CCATT":53286, "CCATC":77777, "CCATG":55064, "CCACA":83339, "CCACT":41860, "CCACC":131175, "CCACG":54356, "CCAGA":138026, "CCAGT":148212, "CCAGC":107197, "CCAGG":69737, "CCTAA":31759, "CCTAT":33827, "CCTAC":37543, "CCTAG":42890, "CCTTA":32678, "CCTTT":78065, "CCTTC":98071, "CCTTG":72291, "CCTCA":72976, "CCTCT":66960, "CCTCC":122183, "CCTCG":67354, "CCTGA":61779, "CCTGT":56226, "CCTGC":98853, "CCTGG":70737, "CCCAA":105878, "CCCAT":57558, "CCCAC":85418, "CCCAG":95833, "CCCTA":37226, "CCCTT":56421, "CCCTC":69763, "CCCTG":59580, "CCCCA":100348, "CCCCT":60614, "CCCCC":69257, "CCCCG":64118, "CCCGA":59276, "CCCGT":39420, "CCCGC":75669, "CCCGG":60999, "CCGAA":67585, "CCGAT":50980, "CCGAC":54273, "CCGAG":66134, "CCGTA":32322, "CCGTT":45170, "CCGTC":53157, "CCGTG":38651, "CCGCA":67228, "CCGCT":59015, "CCGCC":119376, "CCGCG":54502, "CCGGA":61680, "CCGGT":53746, "CCGGC":80731, "CCGGG":57653, "CGAAA":66970, "CGAAT":72451, "CGAAC":50771, "CGAAG":79714, "CGATA":38161, "CGATT":49145, "CGATC":52701, "CGATG":62674, "CGACA":49912, "CGACT":39486, "CGACC":60025, "CGACG":55585, "CGAGA":85727, "CGAGT":31795, "CGAGC":50717, "CGAGG":60218, "CGTAA":26168, "CGTAT":22119, "CGTAC":19398, "CGTAG":39472, "CGTTA":21359, "CGTTT":46208, "CGTTC":45307, "CGTTG":46889, "CGTCA":44576, "CGTCT":308349, "CGTCC":42036, "CGTCG":52163, "CGTGA":35934, "CGTGT":23833, "CGTGC":30597, "CGTGG":46701, "CGCAA":48968, "CGCAT":34520, "CGCAC":38925, "CGCAG":63121, "CGCTA":25234, "CGCTT":53895, "CGCTC":48247, "CGCTG":59152, "CGCCA":84857, "CGCCT":77442, "CGCCC":73501, "CGCCG":91027, "CGCGA":46261, "CGCGT":28835, "CGCGC":49217, "CGCGG":52827, "CGGAA":577008, "CGGAT":43899, "CGGAC":32206, "CGGAG":70624, "CGGTA":33712, "CGGTT":54427, "CGGTC":48535, "CGGTG":58495, "CGGCA":69119, "CGGCT":68533, "CGGCC":67583, "CGGCG":88538, "CGGGA":52699, "CGGGT":44989, "CGGGC":52616, "CGGGG":55176, "GAAAA":113836, "GAAAT":66269, "GAAAC":69564, "GAAAG":85917, "GAATA":45009, "GAATT":50714, "GAATC":52488, "GAATG":72466, "GAACA":63942, "GAACT":222284, "GAACC":71222, "GAACG":43487, "GAAGA":625487, "GAAGT":49798, "GAAGC":85665, "GAAGG":80697, "GATAA":46045, "GATAT":39065, "GATAC":28786, "GATAG":52188, "GATTA":36819, "GATTT":69702, "GATTC":55011, "GATTG":53246, "GATCA":56204, "GATCT":53227, "GATCC":51938, "GATCG":626008, "GATGA":79441, "GATGT":45542, "GATGC":52202, "GATGG":72312, "GACAA":60524, "GACAT":40415, "GACAC":31753, "GACAG":50883, "GACTA":25506, "GACTT":47584, "GACTC":33540, "GACTG":34728, "GACCA":64433, "GACCT":47807, "GACCC":55286, "GACCG":48940, "GACGA":64007, "GACGT":28995, "GACGC":41859, "GACGG":47323, "GAGAA":95695, "GAGAT":182553, "GAGAC":54200, "GAGAG":58743, "GAGTA":24117, "GAGTT":44325, "GAGTC":30503, "GAGTG":24909, "GAGCA":470104, "GAGCT":41700, "GAGCC":55311, "GAGCG":41992, "GAGGA":105081, "GAGGT":52742, "GAGGC":66144, "GAGGG":52097, "GTAAA":26584, "GTAAT":22584, "GTAAC":22847, "GTAAG":22961, "GTATA":16308, "GTATT":31464, "GTATC":26596, "GTATG":24729, "GTACA":20198, "GTACT":19478, "GTACC":23398, "GTACG":19712, "GTAGA":80723, "GTAGT":22271, "GTAGC":28219, "GTAGG":28577, "GTTAA":21538, "GTTAT":29309, "GTTAC":25611, "GTTAG":32251, "GTTTA":31295, "GTTTT":84803, "GTTTC":67307, "GTTTG":71322, "GTTCA":51435, "GTTCT":61808, "GTTCC":66599, "GTTCG":46027, "GTTGA":63651, "GTTGT":61304, "GTTGC":54501, "GTTGG":84130, "GTCAA":49650, "GTCAT":39074, "GTCAC":94889, "GTCAG":44274, "GTCTA":27393, "GTCTT":58728, "GTCTC":53376, "GTCTG":288531, "GTCCA":45467, "GTCCT":46082, "GTCCC":37122, "GTCCG":30788, "GTCGA":48476, "GTCGT":41468, "GTCGC":43892, "GTCGG":45818, "GTGAA":50467, "GTGAT":46218, "GTGAC":28763, "GTGAG":40048, "GTGTA":18311, "GTGTT":42570, "GTGTC":25844, "GTGTG":32295, "GTGCA":32617, "GTGCT":41791, "GTGCC":40395, "GTGCG":32117, "GTGGA":57772, "GTGGT":68991, "GTGGC":57972, "GTGGG":62150, "GCAAA":66405, "GCAAT":55457, "GCAAC":58828, "GCAAG":64905, "GCATA":32694, "GCATT":40554, "GCATC":50984, "GCATG":38141, "GCACA":407087, "GCACT":27172, "GCACC":64462, "GCACG":32949, "GCAGA":116753, "GCAGT":33925, "GCAGC":70286, "GCAGG":83196, "GCTAA":24171, "GCTAT":31925, "GCTAC":30865, "GCTAG":34823, "GCTTA":31275, "GCTTT":71777, "GCTTC":91325, "GCTTG":65342, "GCTCA":49823, "GCTCT":47494, "GCTCC":66900, "GCTCG":50266, "GCTGA":64408, "GCTGT":48452, "GCTGC":71519, "GCTGG":97066, "GCCAA":85041, "GCCAT":57362, "GCCAC":66186, "GCCAG":91283, "GCCTA":39720, "GCCTT":68058, "GCCTC":72644, "GCCTG":72057, "GCCCA":79133, "GCCCT":56335, "GCCCC":63432, "GCCCG":56349, "GCCGA":76629, "GCCGT":53047, "GCCGC":87989, "GCCGG":75139, "GCGAA":59049, "GCGAT":49886, "GCGAC":47363, "GCGAG":56078, "GCGTA":23666, "GCGTT":39536, "GCGTC":38047, "GCGTG":34769, "GCGCA":45285, "GCGCT":45164, "GCGCC":64697, "GCGCG":46823, "GCGGA":60880, "GCGGT":57939, "GCGGC":80647, "GCGGG":63798, "GGAAA":86918, "GGAAT":57054, "GGAAC":60986, "GGAAG":585166, "GGATA":47940, "GGATT":59823, "GGATC":47421, "GGATG":64182, "GGACA":45921, "GGACT":32182, "GGACC":39477, "GGACG":40295, "GGAGA":145311, "GGAGT":35836, "GGAGC":57421, "GGAGG":99516, "GGTAA":27616, "GGTAT":29810, "GGTAC":23644, "GGTAG":51991, "GGTTA":33769, "GGTTT":88391, "GGTTC":63765, "GGTTG":92648, "GGTCA":48366, "GGTCT":56883, "GGTCC":38190, "GGTCG":49078, "GGTGA":67411, "GGTGT":46489, "GGTGC":53688, "GGTGG":97921, "GGCAA":85824, "GGCAT":51103, "GGCAC":41647, "GGCAG":85743, "GGCTA":41010, "GGCTT":80300, "GGCTC":54210, "GGCTG":86840, "GGCCA":65617, "GGCCT":54339, "GGCCC":46189, "GGCCG":63773, "GGCGA":82717, "GGCGT":48492, "GGCGC":62116, "GGCGG":102475, "GGGAA":60738, "GGGAT":50664, "GGGAC":34133, "GGGAG":74199, "GGGTA":29000, "GGGTT":79570, "GGGTC":44760, "GGGTG":60369, "GGGCA":58918, "GGGCT":58977, "GGGCC":43183, "GGGCG":61154, "GGGGA":61219, "GGGGT":59795, "GGGGC":53189, "GGGGG":139940 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1125827, "total_bases": 68675447, "q20_bases": 66740229, "q30_bases": 63731108, "total_cycles": 61, "quality_curves": { "A":[39.2927,39.1462,39.1158,38.8747,38.8832,38.9772,39.042,38.828,39.097,39.1034,39.0821,39.0377,39.1317,39.1268,39.1152,39.1199,39.1077,39.0855,39.1236,39.1234,38.5474,39.0878,39.1034,39.1338,38.5678,39.0537,39.1012,38.5365,38.9566,38.7286,39.063,39.0787,39.0194,39.0604,39.0233,38.4475,39.0087,38.9801,38.903,38.8578,38.2863,38.6509,38.6416,38.5141,38.3596,38.0964,37.67,37.4012,37.7018,37.394,37.1487,36.8958,36.6976,36.2338,36.0441,35.6819,35.4554,35.1903,34.8845,34.3593,34.0451], 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"CCTGG":61815, "CCCAA":90931, "CCCAT":51488, "CCCAC":74923, "CCCAG":68614, "CCCTA":29108, "CCCTT":50461, "CCCTC":61511, "CCCTG":52398, "CCCCA":83532, "CCCCT":53766, "CCCCC":57529, "CCCCG":56069, "CCCGA":48746, "CCCGT":33725, "CCCGC":65309, "CCCGG":53225, "CCGAA":54918, "CCGAT":44485, "CCGAC":46496, "CCGAG":47940, "CCGTA":23929, "CCGTT":39855, "CCGTC":45379, "CCGTG":33632, "CCGCA":53695, "CCGCT":51445, "CCGCC":103410, "CCGCG":46087, "CCGGA":49676, "CCGGT":46572, "CCGGC":69507, "CCGGG":49396, "CGAAA":56071, "CGAAT":35115, "CGAAC":42785, "CGAAG":57738, "CGATA":29687, "CGATT":43475, "CGATC":44572, "CGATG":54690, "CGACA":39953, "CGACT":35221, "CGACC":51802, "CGACG":47740, "CGAGA":47697, "CGAGT":28111, "CGAGC":42672, "CGAGG":51551, "CGTAA":21852, "CGTAT":19736, "CGTAC":16735, "CGTAG":23096, "CGTTA":15983, "CGTTT":41030, "CGTTC":39473, "CGTTG":41194, "CGTCA":36130, "CGTCT":38596, "CGTCC":36882, "CGTCG":44372, "CGTGA":30090, "CGTGT":20379, "CGTGC":26218, "CGTGG":40089, "CGCAA":40465, "CGCAT":30334, "CGCAC":32726, "CGCAG":43238, "CGCTA":18799, "CGCTT":47762, "CGCTC":41211, "CGCTG":50622, "CGCCA":67985, "CGCCT":68801, "CGCCC":63141, "CGCCG":77381, "CGCGA":37517, "CGCGT":24371, "CGCGC":41627, "CGCGG":44598, "CGGAA":49702, "CGGAT":38524, "CGGAC":27231, "CGGAG":48972, "CGGTA":24953, "CGGTT":49016, "CGGTC":41605, "CGGTG":50069, "CGGCA":53818, "CGGCT":60888, "CGGCC":58239, "CGGCG":74472, "CGGGA":43105, "CGGGT":39604, "CGGGC":44484, "CGGGG":47205, "GAAAA":100950, "GAAAT":59338, "GAAAC":62159, "GAAAG":66244, "GAATA":37681, "GAATT":45502, "GAATC":46655, "GAATG":40161, "GAACA":53616, "GAACT":44318, "GAACC":62438, "GAACG":37525, "GAAGA":94291, "GAAGT":44050, "GAAGC":75458, "GAAGG":70967, "GATAA":40179, "GATAT":35090, "GATAC":25475, "GATAG":31084, "GATTA":30671, "GATTT":62999, "GATTC":49579, "GATTG":47540, "GATCA":47308, "GATCT":47225, "GATCC":45269, "GATCG":40320, "GATGA":68603, "GATGT":40871, "GATGC":45995, "GATGG":64557, "GACAA":52031, "GACAT":35266, "GACAC":27563, "GACAG":33514, "GACTA":19958, "GACTT":43080, "GACTC":29245, "GACTG":30382, "GACCA":53826, "GACCT":41982, "GACCC":48507, "GACCG":42276, "GACGA":53459, "GACGT":25304, "GACGC":36086, "GACGG":41429, "GAGAA":82192, "GAGAT":51381, "GAGAC":47776, "GAGAG":43217, "GAGTA":18832, "GAGTT":39738, "GAGTC":27316, "GAGTG":21682, "GAGCA":49905, "GAGCT":36190, "GAGCC":47951, "GAGCG":35659, "GAGGA":88914, "GAGGT":45812, "GAGGC":57883, "GAGGG":45527, "GTAAA":23163, "GTAAT":20138, "GTAAC":19958, "GTAAG":16325, "GTATA":13328, "GTATT":28237, "GTATC":23710, "GTATG":22309, "GTACA":16601, "GTACT":17028, "GTACC":20408, "GTACG":16947, "GTAGA":27047, "GTAGT":19829, "GTAGC":24697, "GTAGG":25000, "GTTAA":18804, "GTTAT":26313, "GTTAC":22754, "GTTAG":16951, "GTTTA":24752, "GTTTT":77392, "GTTTC":60743, "GTTTG":65232, "GTTCA":43556, "GTTCT":56150, "GTTCC":59551, "GTTCG":40679, "GTTGA":55402, "GTTGT":55503, "GTTGC":48654, "GTTGG":75869, "GTCAA":41795, "GTCAT":34839, "GTCAC":27509, "GTCAG":30350, "GTCTA":20779, "GTCTT":52391, "GTCTC":48934, "GTCTG":38917, "GTCCA":37978, "GTCCT":41337, "GTCCC":33234, "GTCCG":26513, "GTCGA":39962, "GTCGT":35894, "GTCGC":37918, "GTCGG":39455, "GTGAA":41817, "GTGAT":40404, "GTGAC":25168, "GTGAG":29720, "GTGTA":13834, "GTGTT":37978, "GTGTC":22451, "GTGTG":28400, "GTGCA":26599, "GTGCT":36381, "GTGCC":35198, "GTGCG":27558, "GTGGA":47574, "GTGGT":60862, "GTGGC":51144, "GTGGG":54042, "GCAAA":55498, "GCAAT":38025, "GCAAC":51599, "GCAAG":47163, "GCATA":25772, "GCATT":36206, "GCATC":44539, "GCATG":33482, "GCACA":32243, "GCACT":23677, "GCACC":55546, "GCACG":27476, "GCAGA":54758, "GCAGT":29693, "GCAGC":60856, "GCAGG":71533, "GCTAA":20199, "GCTAT":28265, "GCTAC":26897, "GCTAG":16925, "GCTTA":23632, "GCTTT":64624, "GCTTC":81771, "GCTTG":58247, "GCTCA":41551, "GCTCT":41864, "GCTCC":59316, "GCTCG":43471, "GCTGA":54198, "GCTGT":42622, "GCTGC":62821, "GCTGG":85365, "GCCAA":70852, "GCCAT":50817, "GCCAC":57783, "GCCAG":60520, "GCCTA":29888, "GCCTT":61079, "GCCTC":65122, "GCCTG":62675, "GCCCA":64624, "GCCCT":49550, "GCCCC":55375, "GCCCG":47769, "GCCGA":61966, "GCCGT":46046, "GCCGC":74683, "GCCGG":63433, "GCGAA":47487, "GCGAT":43273, "GCGAC":40524, "GCGAG":40077, "GCGTA":17380, "GCGTT":34494, "GCGTC":32370, "GCGTG":29254, "GCGCA":35085, "GCGCT":38714, "GCGCC":55725, "GCGCG":38870, "GCGGA":48156, "GCGGT":50732, "GCGGC":68902, "GCGGG":54744, "GGAAA":73513, "GGAAT":50671, "GGAAC":53571, "GGAAG":66777, "GGATA":37246, "GGATT":54506, "GGATC":41740, "GGATG":56605, "GGACA":36872, "GGACT":28366, "GGACC":34631, "GGACG":34192, "GGAGA":84318, "GGAGT":31713, "GGAGC":49757, "GGAGG":85670, "GGTAA":22722, "GGTAT":26751, "GGTAC":20414, "GGTAG":29429, "GGTTA":25690, "GGTTT":80780, "GGTTC":57536, "GGTTG":83573, "GGTCA":39178, "GGTCT":50700, "GGTCC":33542, "GGTCG":41825, "GGTGA":55407, "GGTGT":41310, "GGTGC":46508, "GGTGG":85854, "GGCAA":59025, "GGCAT":45307, "GGCAC":35735, "GGCAG":56650, "GGCTA":31252, "GGCTT":71611, "GGCTC":48052, "GGCTG":76551, "GGCCA":51749, "GGCCT":47728, "GGCCC":39910, "GGCCG":53373, "GGCGA":67286, "GGCGT":41942, "GGCGC":52391, "GGCGG":88091, "GGGAA":50198, "GGGAT":44770, "GGGAC":29694, "GGGAG":53349, "GGGTA":21723, "GGGTT":72192, "GGGTC":39443, "GGGTG":52340, "GGGCA":46835, "GGGCT":51914, "GGGCC":37173, "GGGCG":52001, "GGGGA":50098, "GGGGT":52520, "GGGGC":46071, "GGGGG":40511 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-15B_S91_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-15B_S91_R2_001.fastq.gz -o AM-AL-15B.trim.R1.fastq.gz -O AM-AL-15B.trim.R2.fastq.gz -m --merged_out AM-AL-15B.trim.merged.fastq.gz " }