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"CGGAC":29022, "CGGAG":66845, "CGGTA":31566, "CGGTT":52306, "CGGTC":46368, "CGGTG":57962, "CGGCA":63941, "CGGCT":65947, "CGGCC":63646, "CGGCG":80998, "CGGGA":49116, "CGGGT":43877, "CGGGC":49138, "CGGGG":53389, "GAAAA":97114, "GAAAT":57841, "GAAAC":60509, "GAAAG":73774, "GAATA":39410, "GAATT":44932, "GAATC":46680, "GAATG":40534, "GAACA":56650, "GAACT":218713, "GAACC":63698, "GAACG":38064, "GAAGA":613902, "GAAGT":44898, "GAAGC":76994, "GAAGG":72346, "GATAA":40771, "GATAT":35558, "GATAC":25398, "GATAG":48308, "GATTA":32784, "GATTT":63586, "GATTC":50218, "GATTG":49213, "GATCA":51381, "GATCT":58332, "GATCC":47661, "GATCG":620411, "GATGA":71251, "GATGT":42344, "GATGC":47212, "GATGG":66190, "GACAA":53228, "GACAT":35521, "GACAC":28676, "GACAG":45377, "GACTA":23163, "GACTT":43365, "GACTC":30888, "GACTG":31189, "GACCA":57685, "GACCT":43412, "GACCC":50736, "GACCG":44647, "GACGA":56805, "GACGT":26460, "GACGC":37841, "GACGG":42782, "GAGAA":83173, "GAGAT":175487, "GAGAC":48869, "GAGAG":53611, "GAGTA":21916, "GAGTT":40435, "GAGTC":28425, "GAGTG":23318, "GAGCA":470476, "GAGCT":38063, "GAGCC":50608, "GAGCG":37883, "GAGGA":96209, "GAGGT":49470, "GAGGC":61274, "GAGGG":49059, "GTAAA":22941, "GTAAT":20443, "GTAAC":20340, "GTAAG":20968, "GTATA":14609, "GTATT":29847, "GTATC":24574, "GTATG":22795, "GTACA":18224, "GTACT":17293, "GTACC":21093, "GTACG":17964, "GTAGA":79104, "GTAGT":21096, "GTAGC":25574, "GTAGG":27342, "GTTAA":19486, "GTTAT":26813, "GTTAC":23699, "GTTAG":31025, "GTTTA":29226, "GTTTT":80266, "GTTTC":64304, "GTTTG":69711, "GTTCA":47180, "GTTCT":57455, "GTTCC":64517, "GTTCG":43784, "GTTGA":58515, "GTTGT":60100, "GTTGC":52745, "GTTGG":83356, "GTCAA":44272, "GTCAT":36211, "GTCAC":92334, "GTCAG":40398, "GTCTA":25808, "GTCTT":55727, "GTCTC":53081, "GTCTG":290473, "GTCCA":42510, "GTCCT":44609, "GTCCC":36452, "GTCCG":28899, "GTCGA":44916, "GTCGT":39146, "GTCGC":41224, "GTCGG":43825, "GTGAA":45496, "GTGAT":42019, "GTGAC":26403, "GTGAG":37382, "GTGTA":17392, "GTGTT":41763, 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"GCGCA":40958, "GCGCT":41655, "GCGCC":60957, "GCGCG":42850, "GCGGA":56602, "GCGGT":54953, "GCGGC":74710, "GCGGG":60258, "GGAAA":75661, "GGAAT":50768, "GGAAC":55808, "GGAAG":579296, "GGATA":43755, "GGATT":55752, "GGATC":43866, "GGATG":59263, "GGACA":40851, "GGACT":28876, "GGACC":36604, "GGACG":36693, "GGAGA":135552, "GGAGT":33127, "GGAGC":53074, "GGAGG":94425, "GGTAA":25042, "GGTAT":28211, "GGTAC":21760, "GGTAG":50280, "GGTTA":31553, "GGTTT":86459, "GGTTC":62049, "GGTTG":92203, "GGTCA":45195, "GGTCT":56549, "GGTCC":36143, "GGTCG":46800, "GGTGA":62516, "GGTGT":47460, "GGTGC":50582, "GGTGG":99444, "GGCAA":63178, "GGCAT":47174, "GGCAC":38724, "GGCAG":81101, "GGCTA":38880, "GGCTT":76646, "GGCTC":52247, "GGCTG":82093, "GGCCA":60340, "GGCCT":51540, "GGCCC":44502, "GGCCG":60412, "GGCGA":73973, "GGCGT":45548, "GGCGC":57588, "GGCGG":97337, "GGGAA":54798, "GGGAT":47241, "GGGAC":31625, "GGGAG":69137, "GGGTA":28366, "GGGTT":79309, "GGGTC":44514, "GGGTG":60199, "GGGCA":55132, "GGGCT":56540, "GGGCC":40908, "GGGCG":57127, "GGGGA":57250, "GGGGT":61576, "GGGGC":51221, "GGGGG":130782 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1053805, "total_bases": 64282105, "q20_bases": 62364434, "q30_bases": 59500513, "total_cycles": 61, "quality_curves": { "A":[39.1741,39.1606,39.0625,38.9252,39.0428,38.9703,39.082,38.9516,39.0924,39.0674,39.1058,39.1099,39.1394,39.1274,39.1021,39.1209,39.1169,39.119,39.1329,39.1211,38.5451,39.0729,39.1232,39.1183,38.5974,39.0628,39.1124,38.5447,38.972,38.7621,39.0991,39.1239,39.0451,39.077,38.9077,38.5288,39.0494,38.9822,38.956,38.8046,38.4094,38.3964,38.617,38.4896,38.312,38.026,37.6371,37.317,37.5634,37.2642,37.009,36.7239,36.4678,35.9992,35.7989,35.4116,35.103,34.7774,34.4708,33.8826,33.5649], 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"CTTGA":51153, "CTTGT":52426, "CTTGC":48329, "CTTGG":61470, "CTCAA":49685, "CTCAT":39831, "CTCAC":33079, "CTCAG":40813, "CTCTA":24648, "CTCTT":62820, "CTCTC":49330, "CTCTG":46440, "CTCCA":71852, "CTCCT":106201, "CTCCC":65955, "CTCCG":56144, "CTCGA":46989, "CTCGT":36786, "CTCGC":45375, "CTCGG":46097, "CTGAA":48726, "CTGAT":40689, "CTGAC":30913, "CTGAG":37865, "CTGTA":16842, "CTGTT":56204, "CTGTC":33536, "CTGTG":34478, "CTGCA":47782, "CTGCT":82130, "CTGCC":67050, "CTGCG":42652, "CTGGA":60122, "CTGGT":60488, "CTGGC":59250, "CTGGG":60035, "CCAAA":84003, "CCAAT":43160, "CCAAC":87718, "CCAAG":60795, "CCATA":33724, "CCATT":46478, "CCATC":65494, "CCATG":44963, "CCACA":64035, "CCACT":34729, "CCACC":108532, "CCACG":44009, "CCAGA":60143, "CCAGT":42879, "CCAGC":87836, "CCAGG":55778, "CCTAA":23161, "CCTAT":27571, "CCTAC":30774, "CCTAG":21455, "CCTTA":22646, "CCTTT":67513, "CCTTC":83223, "CCTTG":61892, "CCTCA":58200, "CCTCT":58331, "CCTCC":110484, "CCTCG":57215, "CCTGA":47385, "CCTGT":49424, "CCTGC":86068, "CCTGG":58653, "CCCAA":82512, "CCCAT":48801, "CCCAC":71475, "CCCAG":64525, "CCCTA":26273, "CCCTT":48621, "CCCTC":59859, "CCCTG":50470, "CCCCA":79445, "CCCCT":52454, "CCCCC":56204, "CCCCG":53580, "CCCGA":44360, "CCCGT":31858, "CCCGC":63210, "CCCGG":50721, "CCGAA":48618, "CCGAT":40958, "CCGAC":42748, "CCGAG":43645, "CCGTA":21674, "CCGTT":37678, "CCGTC":43353, "CCGTG":31494, "CCGCA":49087, "CCGCT":49302, "CCGCC":99026, "CCGCG":43403, "CCGGA":46160, "CCGGT":45750, "CCGGC":66260, "CCGGG":47188, "CGAAA":48460, "CGAAT":30626, "CGAAC":38658, "CGAAG":51584, "CGATA":25985, "CGATT":39481, "CGATC":40707, "CGATG":49776, "CGACA":35451, "CGACT":32666, "CGACC":46845, "CGACG":43039, "CGAGA":42466, "CGAGT":25524, "CGAGC":39554, "CGAGG":47474, "CGTAA":19100, "CGTAT":18350, "CGTAC":14568, "CGTAG":21454, "CGTTA":14290, "CGTTT":38149, "CGTTC":37315, "CGTTG":38368, "CGTCA":32893, "CGTCT":37521, "CGTCC":35376, "CGTCG":41582, "CGTGA":27507, "CGTGT":18902, "CGTGC":24250, "CGTGG":38454, "CGCAA":35651, "CGCAT":27768, "CGCAC":30200, "CGCAG":39288, "CGCTA":16861, "CGCTT":45408, "CGCTC":38988, "CGCTG":47294, "CGCCA":63259, "CGCCT":66426, "CGCCC":60223, "CGCCG":73387, "CGCGA":33687, "CGCGT":22624, "CGCGC":38277, "CGCGG":42004, "CGGAA":44147, "CGGAT":35207, "CGGAC":24593, "CGGAG":46408, "CGGTA":22934, "CGGTT":47289, "CGGTC":40040, "CGGTG":49795, "CGGCA":49679, "CGGCT":58306, "CGGCC":54842, "CGGCG":68282, "CGGGA":39823, "CGGGT":38810, "CGGGC":41787, "CGGGG":45582, "GAAAA":86125, "GAAAT":52012, "GAAAC":54460, "GAAAG":56442, "GAATA":33022, "GAATT":40644, "GAATC":41447, "GAATG":36203, "GAACA":47095, "GAACT":39622, "GAACC":55760, "GAACG":33000, "GAAGA":81391, "GAAGT":39853, "GAAGC":67568, "GAAGG":64142, "GATAA":35217, "GATAT":31750, "GATAC":22735, "GATAG":27964, "GATTA":26871, "GATTT":57750, "GATTC":45513, "GATTG":43978, "GATCA":42624, "GATCT":43243, "GATCC":41976, "GATCG":36712, "GATGA":61395, "GATGT":38249, "GATGC":41588, "GATGG":59014, "GACAA":45924, "GACAT":31235, "GACAC":24886, "GACAG":29261, "GACTA":18090, "GACTT":39087, "GACTC":26900, "GACTG":27309, "GACCA":48027, "GACCT":38003, "GACCC":44579, "GACCG":38638, "GACGA":47987, "GACGT":23172, "GACGC":32960, "GACGG":37230, "GAGAA":71734, "GAGAT":46118, "GAGAC":43408, "GAGAG":38637, "GAGTA":16967, "GAGTT":36096, "GAGTC":25240, "GAGTG":20521, "GAGCA":45858, "GAGCT":33493, "GAGCC":44091, "GAGCG":32045, "GAGGA":81269, "GAGGT":43777, "GAGGC":53623, "GAGGG":42907, "GTAAA":19915, "GTAAT":18335, "GTAAC":17752, "GTAAG":14506, "GTATA":11789, "GTATT":26781, "GTATC":22116, "GTATG":20545, "GTACA":15093, "GTACT":15084, "GTACC":18463, "GTACG":15304, "GTAGA":25645, "GTAGT":18908, "GTAGC":22486, "GTAGG":24148, "GTTAA":16711, "GTTAT":24517, "GTTAC":21044, "GTTAG":15536, "GTTTA":22742, "GTTTT":73491, "GTTTC":58228, "GTTTG":63520, "GTTCA":40274, "GTTCT":52223, "GTTCC":57813, "GTTCG":38946, "GTTGA":50793, "GTTGT":54577, "GTTGC":47409, "GTTGG":75214, "GTCAA":37498, "GTCAT":32552, "GTCAC":25304, "GTCAG":27350, "GTCTA":19465, "GTCTT":50351, "GTCTC":49051, "GTCTG":37713, "GTCCA":35739, "GTCCT":40044, "GTCCC":32532, "GTCCG":25028, "GTCGA":36937, "GTCGT":34084, "GTCGC":35962, "GTCGG":37741, "GTGAA":37358, "GTGAT":36774, "GTGAC":23072, "GTGAG":27623, "GTGTA":13575, "GTGTT":37945, "GTGTC":21509, "GTGTG":28499, "GTGCA":24681, "GTGCT":34536, "GTGCC":33279, "GTGCG":25731, "GTGGA":45461, "GTGGT":62174, "GTGGC":49282, "GTGGG":54207, "GCAAA":46929, "GCAAT":33708, "GCAAC":47247, "GCAAG":42165, "GCATA":23564, "GCATT":33288, "GCATC":40570, "GCATG":30291, "GCACA":29270, "GCACT":21818, "GCACC":52014, "GCACG":25141, "GCAGA":49133, "GCAGT":27347, "GCAGC":56793, "GCAGG":67818, "GCTAA":18187, "GCTAT":25985, "GCTAC":24636, "GCTAG":16087, "GCTTA":22039, "GCTTT":60990, "GCTTC":79201, "GCTTG":55407, "GCTCA":38634, "GCTCT":39011, "GCTCC":57428, "GCTCG":41221, "GCTGA":49355, "GCTGT":40358, "GCTGC":59944, "GCTGG":80719, "GCCAA":64017, "GCCAT":47484, "GCCAC":54041, "GCCAG":56128, "GCCTA":28099, "GCCTT":57430, "GCCTC":62728, "GCCTG":60188, "GCCCA":59969, "GCCCT":47712, "GCCCC":53448, "GCCCG":45064, "GCCGA":56914, "GCCGT":44283, "GCCGC":70135, "GCCGG":61020, "GCGAA":41346, "GCGAT":38844, "GCGAC":35418, "GCGAG":36163, "GCGTA":15726, "GCGTT":32076, "GCGTC":30479, "GCGTG":27212, "GCGCA":31457, "GCGCT":35691, "GCGCC":52318, "GCGCG":35828, "GCGGA":44608, "GCGGT":48105, "GCGGC":64105, "GCGGG":51567, "GGAAA":64289, "GGAAT":45685, "GGAAC":48769, "GGAAG":60473, "GGATA":34236, "GGATT":50650, "GGATC":38529, "GGATG":52257, "GGACA":33025, "GGACT":25305, "GGACC":32125, "GGACG":31242, "GGAGA":75853, "GGAGT":29304, "GGAGC":46336, "GGAGG":81698, "GGTAA":20500, "GGTAT":25134, "GGTAC":18630, "GGTAG":28011, "GGTTA":23982, "GGTTT":79128, "GGTTC":56273, "GGTTG":83543, "GGTCA":36901, "GGTCT":50552, "GGTCC":32043, "GGTCG":40172, "GGTGA":51492, "GGTGT":42541, "GGTGC":44133, "GGTGG":87382, "GGCAA":52035, "GGCAT":42143, "GGCAC":33197, "GGCAG":53140, "GGCTA":28875, "GGCTT":69089, "GGCTC":46248, "GGCTG":72653, "GGCCA":47280, "GGCCT":45255, "GGCCC":38203, "GGCCG":50909, "GGCGA":60154, "GGCGT":39526, "GGCGC":48810, "GGCGG":83914, "GGGAA":45401, "GGGAT":42026, "GGGAC":27535, "GGGAG":48945, "GGGTA":21108, "GGGTT":72079, "GGGTC":39670, "GGGTG":52070, "GGGCA":43697, "GGGCT":50315, "GGGCC":35303, "GGGCG":48784, "GGGGA":46732, "GGGGT":53656, "GGGGC":44543, "GGGGG":40074 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-15A_S90_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-15A_S90_R2_001.fastq.gz -o AM-AL-15A.trim.R1.fastq.gz -O AM-AL-15A.trim.R2.fastq.gz -m --merged_out AM-AL-15A.trim.merged.fastq.gz " }