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"GCGCA":51437, "GCGCT":50186, "GCGCC":74422, "GCGCG":55311, "GCGGA":59438, "GCGGT":60051, "GCGGC":91571, "GCGGG":67628, "GGAAA":77886, "GGAAT":49994, "GGAAC":56610, "GGAAG":595003, "GGATA":44598, "GGATT":56135, "GGATC":58718, "GGATG":63861, "GGACA":42404, "GGACT":30171, "GGACC":37156, "GGACG":41462, "GGAGA":133679, "GGAGT":34438, "GGAGC":56430, "GGAGG":98134, "GGTAA":27232, "GGTAT":28822, "GGTAC":23316, "GGTAG":54501, "GGTTA":32029, "GGTTT":85704, "GGTTC":60533, "GGTTG":89592, "GGTCA":48958, "GGTCT":55005, "GGTCC":37792, "GGTCG":52989, "GGTGA":69876, "GGTGT":49474, "GGTGC":58535, "GGTGG":104785, "GGCAA":68577, "GGCAT":51349, "GGCAC":42022, "GGCAG":87663, "GGCTA":41006, "GGCTT":78893, "GGCTC":52277, "GGCTG":88484, "GGCCA":72394, "GGCCT":56944, "GGCCC":49956, "GGCCG":74909, "GGCGA":84279, "GGCGT":52684, "GGCGC":73368, "GGCGG":110716, "GGGAA":57538, "GGGAT":49253, "GGGAC":33638, "GGGAG":73181, "GGGTA":30277, "GGGTT":77730, "GGGTC":45597, "GGGTG":66578, "GGGCA":60337, "GGGCT":58769, "GGGCC":47784, "GGGCG":68217, "GGGGA":60618, "GGGGT":64200, "GGGGC":56528, "GGGGG":161035 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1092749, "total_bases": 66657689, "q20_bases": 64564091, "q30_bases": 61611032, "total_cycles": 61, "quality_curves": { "A":[39.2914,39.2055,39.0147,38.8679,39.0596,39.1206,39.0785,38.9092,39.1239,39.1077,39.0969,39.0982,39.1249,39.121,39.1234,39.1148,39.1213,39.1184,39.1414,39.1341,38.463,39.1025,39.1284,39.148,38.4675,39.0915,39.1093,38.4151,38.9742,38.671,39.1165,39.1098,39.0566,38.6535,39.0718,39.0336,39.046,38.9531,38.9416,38.8656,38.6638,38.1206,38.6425,38.4955,38.3146,38.011,37.5102,37.1838,37.5344,37.2461,36.9131,36.6469,36.4052,35.8955,35.695,35.3343,35.0282,34.7496,34.4707,33.9126,33.712], 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"CTTGT":47963, "CTTGC":46328, "CTTGG":57589, "CTCAA":43625, "CTCAT":35301, "CTCAC":30018, "CTCAG":34600, "CTCTA":22641, "CTCTT":57645, "CTCTC":45415, "CTCTG":41022, "CTCCA":63373, "CTCCT":100652, "CTCCC":62151, "CTCCG":51148, "CTCGA":41895, "CTCGT":34809, "CTCGC":41473, "CTCGG":42750, "CTGAA":43952, "CTGAT":38816, "CTGAC":29472, "CTGAG":31974, "CTGTA":16111, "CTGTT":52302, "CTGTC":30383, "CTGTG":31212, "CTGCA":43552, "CTGCT":82248, "CTGCC":63114, "CTGCG":41084, "CTGGA":57424, "CTGGT":58816, "CTGGC":59344, "CTGGG":57053, "CCAAA":72129, "CCAAT":39728, "CCAAC":77481, "CCAAG":52967, "CCATA":29959, "CCATT":41408, "CCATC":59924, "CCATG":41616, "CCACA":54468, "CCACT":31038, "CCACC":100321, "CCACG":40333, "CCAGA":53311, "CCAGT":41074, "CCAGC":84044, "CCAGG":53662, "CCTAA":19673, "CCTAT":24584, "CCTAC":26701, "CCTAG":17436, "CCTTA":20288, "CCTTT":62155, "CCTTC":77546, "CCTTG":56448, "CCTCA":50432, "CCTCT":52751, "CCTCC":103231, "CCTCG":52772, "CCTGA":43546, "CCTGT":44885, "CCTGC":82428, "CCTGG":58517, "CCCAA":71948, "CCCAT":44444, "CCCAC":64022, "CCCAG":59020, "CCCTA":23097, "CCCTT":45066, "CCCTC":55240, "CCCTG":48686, "CCCCA":71683, "CCCCT":48778, "CCCCC":53003, "CCCCG":50757, "CCCGA":40745, "CCCGT":30313, "CCCGC":59857, "CCCGG":48152, "CCGAA":44339, "CCGAT":39560, "CCGAC":40325, "CCGAG":39662, "CCGTA":19818, "CCGTT":34807, "CCGTC":41469, "CCGTG":30712, "CCGCA":46188, "CCGCT":48177, "CCGCC":96759, "CCGCG":41341, "CCGGA":42229, "CCGGT":43363, "CCGGC":65662, "CCGGG":45223, "CGAAA":44022, "CGAAT":28509, "CGAAC":34352, "CGAAG":46864, "CGATA":25728, "CGATT":36347, "CGATC":39069, "CGATG":48240, "CGACA":33436, "CGACT":29587, "CGACC":44847, "CGACG":41542, "CGAGA":37735, "CGAGT":22690, "CGAGC":35628, "CGAGG":43888, "CGTAA":17378, "CGTAT":16394, "CGTAC":13835, "CGTAG":19275, "CGTTA":13732, "CGTTT":35768, "CGTTC":34511, "CGTTG":35637, "CGTCA":30555, "CGTCT":34238, "CGTCC":34590, "CGTCG":40855, "CGTGA":25185, "CGTGT":18172, "CGTGC":25046, "CGTGG":36721, "CGCAA":33518, "CGCAT":26645, "CGCAC":30000, "CGCAG":37305, "CGCTA":16010, "CGCTT":43229, "CGCTC":37760, "CGCTG":47122, "CGCCA":59863, "CGCCT":61406, "CGCCC":58960, "CGCCG":75944, "CGCGA":30935, "CGCGT":21154, "CGCGC":39531, "CGCGG":40738, "CGGAA":40523, "CGGAT":33111, "CGGAC":22890, "CGGAG":40912, "CGGTA":21685, "CGGTT":42593, "CGGTC":38223, "CGGTG":48504, "CGGCA":48284, "CGGCT":54845, "CGGCC":56240, "CGGCG":70972, "CGGGA":36809, "CGGGT":36949, "CGGGC":41883, "CGGGG":43889, "GAAAA":78893, "GAAAT":48508, "GAAAC":48083, "GAAAG":51682, "GAATA":30047, "GAATT":37573, "GAATC":36940, "GAATG":32473, "GAACA":42593, "GAACT":36657, "GAACC":48136, "GAACG":30367, "GAAGA":73757, "GAAGT":36466, "GAAGC":60248, "GAAGG":58958, "GATAA":32548, "GATAT":29132, "GATAC":22178, "GATAG":25981, "GATTA":24829, "GATTT":53166, "GATTC":40448, "GATTG":40406, "GATCA":40355, "GATCT":39767, "GATCC":38136, "GATCG":35796, "GATGA":57702, "GATGT":35419, "GATGC":40102, "GATGG":56204, "GACAA":41487, "GACAT":28398, "GACAC":22355, "GACAG":27288, "GACTA":16090, "GACTT":35940, "GACTC":22272, "GACTG":25503, "GACCA":44156, "GACCT":34858, "GACCC":39584, "GACCG":36364, "GACGA":45255, "GACGT":21821, "GACGC":31414, "GACGG":36017, "GAGAA":63352, "GAGAT":41464, "GAGAC":37093, "GAGAG":34953, "GAGTA":15904, "GAGTT":33041, "GAGTC":21079, "GAGTG":19000, "GAGCA":41959, "GAGCT":30504, "GAGCC":38325, "GAGCG":30375, "GAGGA":74145, "GAGGT":40066, "GAGGC":47471, "GAGGG":40441, "GTAAA":19670, "GTAAT":16990, "GTAAC":16093, "GTAAG":13318, "GTATA":11046, "GTATT":23827, "GTATC":19993, "GTATG":18458, "GTACA":14755, "GTACT":14467, "GTACC":17410, "GTACG":13987, "GTAGA":22792, "GTAGT":17544, "GTAGC":21415, "GTAGG":22239, "GTTAA":16080, "GTTAT":23118, "GTTAC":19646, "GTTAG":13903, "GTTTA":21342, "GTTTT":68961, "GTTTC":52419, "GTTTG":57897, "GTTCA":37383, "GTTCT":48072, "GTTCC":52566, "GTTCG":36150, "GTTGA":45498, "GTTGT":48886, "GTTGC":43943, "GTTGG":69510, "GTCAA":33472, "GTCAT":30240, "GTCAC":23735, "GTCAG":26316, "GTCTA":17177, "GTCTT":44722, "GTCTC":42688, "GTCTG":33413, "GTCCA":33126, "GTCCT":36523, "GTCCC":30331, "GTCCG":23928, "GTCGA":34071, "GTCGT":32907, "GTCGC":35612, "GTCGG":36518, "GTGAA":34761, "GTGAT":35607, "GTGAC":22269, "GTGAG":25314, "GTGTA":12926, "GTGTT":35420, "GTGTC":19987, "GTGTG":26496, "GTGCA":23227, "GTGCT":34604, "GTGCC":31859, "GTGCG":25485, "GTGGA":41175, "GTGGT":58168, "GTGGC":46829, "GTGGG":51257, "GCAAA":44757, "GCAAT":31691, "GCAAC":42375, "GCAAG":39337, "GCATA":20952, "GCATT":31062, "GCATC":38088, "GCATG":28987, "GCACA":26275, "GCACT":20005, "GCACC":49724, "GCACG":25251, "GCAGA":44099, "GCAGT":25473, "GCAGC":55099, "GCAGG":63288, "GCTAA":16568, "GCTAT":24540, "GCTAC":23307, "GCTAG":14027, "GCTTA":19799, "GCTTT":56606, "GCTTC":71605, "GCTTG":53260, "GCTCA":35423, "GCTCT":36040, "GCTCC":55011, "GCTCG":38948, "GCTGA":46203, "GCTGT":38240, "GCTGC":61241, "GCTGG":80506, "GCCAA":57694, "GCCAT":44718, "GCCAC":48784, "GCCAG":53941, "GCCTA":23990, "GCCTT":52639, "GCCTC":57067, "GCCTG":57820, "GCCCA":54751, "GCCCT":43737, "GCCCC":51371, "GCCCG":44264, "GCCGA":55036, "GCCGT":43238, "GCCGC":72397, "GCCGG":61014, "GCGAA":37451, "GCGAT":38102, "GCGAC":34637, "GCGAG":33384, "GCGTA":15016, "GCGTT":30156, "GCGTC":28594, "GCGTG":26810, "GCGCA":32368, "GCGCT":36002, "GCGCC":52802, "GCGCG":37428, "GCGGA":41556, "GCGGT":46271, "GCGGC":65822, "GCGGG":50780, "GGAAA":59212, "GGAAT":40441, "GGAAC":44311, "GGAAG":55297, "GGATA":31216, "GGATT":45871, "GGATC":35725, "GGATG":49619, "GGACA":30303, "GGACT":23316, "GGACC":28380, "GGACG":30110, "GGAGA":66746, "GGAGT":26963, "GGAGC":42833, "GGAGG":75844, "GGTAA":19629, "GGTAT":22682, "GGTAC":17581, "GGTAG":26194, "GGTTA":22046, "GGTTT":72578, "GGTTC":49923, "GGTTG":74185, "GGTCA":34733, "GGTCT":44935, "GGTCC":29469, "GGTCG":39663, "GGTGA":50277, "GGTGT":40026, "GGTGC":43992, "GGTGG":83286, "GGCAA":48813, "GGCAT":39275, "GGCAC":30609, "GGCAG":50110, "GGCTA":26983, "GGCTT":63051, "GGCTC":41833, "GGCTG":68800, "GGCCA":47482, "GGCCT":43645, "GGCCC":37140, "GGCCG":52182, "GGCGA":58696, "GGCGT":38502, "GGCGC":50120, "GGCGG":82823, "GGGAA":41818, "GGGAT":39142, "GGGAC":25506, "GGGAG":45998, "GGGTA":19551, "GGGTT":64982, "GGGTC":36169, "GGGTG":51506, "GGGCA":41100, "GGGCT":46583, "GGGCC":35403, "GGGCG":49089, "GGGGA":43855, "GGGGT":50894, "GGGGC":43334, "GGGGG":38588 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-14C_S89_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-14C_S89_R2_001.fastq.gz -o AM-AL-14C.trim.R1.fastq.gz -O AM-AL-14C.trim.R2.fastq.gz -m --merged_out AM-AL-14C.trim.merged.fastq.gz " }