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"GGGCC":52378, "GGGCG":75625, "GGGGA":62773, "GGGGT":66312, "GGGGC":60440, "GGGGG":137483 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1110053, "total_bases": 67713233, "q20_bases": 65901499, "q30_bases": 63024620, "total_cycles": 61, "quality_curves": { "A":[39.3339,39.0488,38.9441,38.9986,39.0516,39.1409,39.1035,38.894,39.1008,39.1035,39.1281,39.12,39.1316,39.1159,39.1036,39.1105,39.1236,39.1067,39.1292,39.1008,38.5497,39.0567,39.0941,39.1119,38.6062,39.0744,39.1285,38.5107,39.0587,38.6073,39.09,39.0758,39.0249,38.9489,39.0439,39.0199,39.0325,38.9724,38.8782,38.3386,38.4483,38.2216,38.657,38.5496,38.4316,38.2314,37.6205,37.5037,37.8862,37.5915,37.3713,37.1511,37.0081,36.4674,36.4172,36.1261,35.8671,35.647,35.3988,34.8604,34.7727], 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"GC":[0.583919,0.516866,0.59029,0.580511,0.573224,0.520461,0.528113,0.506961,0.50244,0.518175,0.519361,0.517426,0.528799,0.528554,0.525751,0.532543,0.530361,0.528198,0.533461,0.531345,0.528534,0.5327,0.530918,0.525753,0.533339,0.532048,0.52557,0.529765,0.529407,0.528082,0.532333,0.531039,0.52446,0.531102,0.531422,0.523689,0.529461,0.527195,0.522262,0.529232,0.52661,0.522948,0.527473,0.525671,0.522679,0.527531,0.525989,0.52328,0.527842,0.52727,0.522578,0.530216,0.525659,0.521977,0.527087,0.524856,0.524326,0.528043,0.525382,0.522683,0.525522,0.52841,0.526692,0.532173,0.526385,0.526457,0.534352,0.528897,0.52951,0.537346,0.534623,0.530016,0.533991,0.535099,0.534034,0.543662,0.540748,0.537678,0.542781,0.540001,0.537599,0.551492,0.55448,0.554857,0.574308,0.57876,0.571659,0.589586,0.592458,0.555844,0.507878] }, "kmer_count": { "AAAAA":88801, "AAAAT":56328, "AAAAC":67571, "AAAAG":62344, "AAATA":33911, "AAATT":39521, "AAATC":48325, "AAATG":38525, "AAACA":52804, "AAACT":37757, "AAACC":75332, 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"CCTGG":58080, "CCCAA":73935, "CCCAT":44450, "CCCAC":65294, "CCCAG":59984, "CCCTA":23592, "CCCTT":44723, "CCCTC":54143, "CCCTG":48746, "CCCCA":72839, "CCCCT":47865, "CCCCC":52830, "CCCCG":52165, "CCCGA":41543, "CCCGT":30600, "CCCGC":62584, "CCCGG":48262, "CCGAA":44921, "CCGAT":40420, "CCGAC":40379, "CCGAG":39782, "CCGTA":20333, "CCGTT":34488, "CCGTC":41382, "CCGTG":31255, "CCGCA":47910, "CCGCT":49174, "CCGCC":99424, "CCGCG":43365, "CCGGA":43098, "CCGGT":42889, "CCGGC":64388, "CCGGG":45301, "CGAAA":45228, "CGAAT":28612, "CGAAC":35153, "CGAAG":46763, "CGATA":26012, "CGATT":36107, "CGATC":40050, "CGATG":48213, "CGACA":33888, "CGACT":30283, "CGACC":43832, "CGACG":41783, "CGAGA":36943, "CGAGT":22869, "CGAGC":36238, "CGAGG":43190, "CGTAA":18393, "CGTAT":16663, "CGTAC":14274, "CGTAG":19760, "CGTTA":14072, "CGTTT":35608, "CGTTC":34527, "CGTTG":35585, "CGTCA":31632, "CGTCT":33213, "CGTCC":34498, "CGTCG":40544, "CGTGA":25398, "CGTGT":18121, "CGTGC":26024, "CGTGG":36622, "CGCAA":34833, "CGCAT":27243, "CGCAC":30688, "CGCAG":39057, "CGCTA":16736, "CGCTT":43645, "CGCTC":38515, "CGCTG":48184, "CGCCA":62626, "CGCCT":61720, "CGCCC":60957, "CGCCG":76973, "CGCGA":31577, "CGCGT":22069, "CGCGC":41838, "CGCGG":41920, "CGGAA":41088, "CGGAT":32584, "CGGAC":23851, "CGGAG":40761, "CGGTA":21185, "CGGTT":41383, "CGGTC":37658, "CGGTG":46824, "CGGCA":47751, "CGGCT":55360, "CGGCC":56815, "CGGCG":68600, "CGGGA":36887, "CGGGT":35877, "CGGGC":42042, "CGGGG":43365, "GAAAA":79335, "GAAAT":48709, "GAAAC":48512, "GAAAG":51867, "GAATA":30022, "GAATT":36882, "GAATC":37092, "GAATG":31803, "GAACA":42864, "GAACT":36534, "GAACC":49255, "GAACG":30682, "GAAGA":70508, "GAAGT":36574, "GAAGC":59407, "GAAGG":57961, "GATAA":31628, "GATAT":28520, "GATAC":21875, "GATAG":25900, "GATTA":24258, "GATTT":51454, "GATTC":40411, "GATTG":39562, "GATCA":40597, "GATCT":38731, "GATCC":39522, "GATCG":34815, "GATGA":56351, "GATGT":34543, "GATGC":40385, "GATGG":54778, "GACAA":42215, "GACAT":28876, "GACAC":22320, "GACAG":27390, "GACTA":16285, "GACTT":35760, "GACTC":22407, "GACTG":26204, "GACCA":43385, "GACCT":35098, "GACCC":40152, "GACCG":36373, "GACGA":43909, "GACGT":22642, "GACGC":31847, "GACGG":34721, "GAGAA":61485, "GAGAT":40106, "GAGAC":36161, "GAGAG":33456, "GAGTA":15863, "GAGTT":32537, "GAGTC":20672, "GAGTG":18682, "GAGCA":41805, "GAGCT":30793, "GAGCC":38727, "GAGCG":31017, "GAGGA":69321, "GAGGT":39469, "GAGGC":47696, "GAGGG":39128, "GTAAA":19492, "GTAAT":17435, "GTAAC":16569, "GTAAG":13178, "GTATA":11330, "GTATT":23021, "GTATC":20061, "GTATG":18408, "GTACA":14963, "GTACT":14657, "GTACC":18063, "GTACG":14004, "GTAGA":23096, "GTAGT":17317, "GTAGC":21862, "GTAGG":22191, "GTTAA":16555, "GTTAT":22334, "GTTAC":19869, "GTTAG":13179, "GTTTA":20845, "GTTTT":65822, "GTTTC":51231, "GTTTG":55324, "GTTCA":37401, "GTTCT":46404, "GTTCC":51747, "GTTCG":35943, "GTTGA":44345, "GTTGT":46377, "GTTGC":43491, "GTTGG":65106, "GTCAA":33953, "GTCAT":29822, "GTCAC":24089, "GTCAG":26921, "GTCTA":16933, "GTCTT":44497, "GTCTC":40303, "GTCTG":32785, "GTCCA":33293, "GTCCT":35876, "GTCCC":29955, "GTCCG":24170, "GTCGA":34283, "GTCGT":31933, "GTCGC":35086, "GTCGG":35753, "GTGAA":34978, "GTGAT":35015, "GTGAC":22200, "GTGAG":24615, "GTGTA":12721, "GTGTT":33983, "GTGTC":19558, "GTGTG":24821, "GTGCA":23238, "GTGCT":33743, "GTGCC":32502, "GTGCG":26151, "GTGGA":40673, "GTGGT":53704, "GTGGC":45762, "GTGGG":48973, "GCAAA":45595, "GCAAT":32359, "GCAAC":41910, "GCAAG":39286, "GCATA":21136, "GCATT":30740, "GCATC":38910, "GCATG":29288, "GCACA":26668, "GCACT":20645, "GCACC":49830, "GCACG":26832, "GCAGA":42337, "GCAGT":26105, "GCAGC":55462, "GCAGG":62213, "GCTAA":16750, "GCTAT":25267, "GCTAC":23895, "GCTAG":14104, "GCTTA":20206, "GCTTT":55380, "GCTTC":71566, "GCTTG":52139, "GCTCA":36886, "GCTCT":36276, "GCTCC":53561, "GCTCG":38912, "GCTGA":45623, "GCTGT":37885, "GCTGC":60110, "GCTGG":78990, "GCCAA":59306, "GCCAT":45134, "GCCAC":49929, "GCCAG":56012, "GCCTA":24723, "GCCTT":53389, "GCCTC":56548, "GCCTG":58695, "GCCCA":56889, "GCCCT":45469, "GCCCC":51997, "GCCCG":46164, "GCCGA":55786, "GCCGT":43745, "GCCGC":75031, "GCCGG":60608, "GCGAA":38104, "GCGAT":38015, "GCGAC":34109, "GCGAG":33419, "GCGTA":15472, "GCGTT":30896, "GCGTC":29290, "GCGTG":27458, "GCGCA":33528, "GCGCT":36755, "GCGCC":54544, "GCGCG":39208, "GCGGA":42190, "GCGGT":45514, "GCGGC":66571, "GCGGG":50514, "GGAAA":58307, "GGAAT":39908, "GGAAC":43669, "GGAAG":54912, "GGATA":30169, "GGATT":44620, "GGATC":35670, "GGATG":48208, "GGACA":30978, "GGACT":23357, "GGACC":28502, "GGACG":29905, "GGAGA":64338, "GGAGT":26324, "GGAGC":42588, "GGAGG":72083, "GGTAA":19310, "GGTAT":22213, "GGTAC":17759, "GGTAG":26421, "GGTTA":21225, "GGTTT":67549, "GGTTC":49120, "GGTTG":69918, "GGTCA":34874, "GGTCT":42942, "GGTCC":29558, "GGTCG":38030, "GGTGA":49571, "GGTGT":37655, "GGTGC":43023, "GGTGG":78087, "GGCAA":48014, "GGCAT":38960, "GGCAC":31421, "GGCAG":48616, "GGCTA":27826, "GGCTT":62278, "GGCTC":41537, "GGCTG":67584, "GGCCA":48279, "GGCCT":43553, "GGCCC":38189, "GGCCG":53224, "GGCGA":56883, "GGCGT":38763, "GGCGC":51061, "GGCGG":81574, "GGGAA":41405, "GGGAT":37949, "GGGAC":26383, "GGGAG":43692, "GGGTA":19810, "GGGTT":61262, "GGGTC":35042, "GGGTG":49333, "GGGCA":41016, "GGGCT":45637, "GGGCC":35449, "GGGCG":49568, "GGGGA":42043, "GGGGT":48465, "GGGGC":42996, "GGGGG":36782 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-14A_S87_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-14A_S87_R2_001.fastq.gz -o AM-AL-14A.trim.R1.fastq.gz -O AM-AL-14A.trim.R2.fastq.gz -m --merged_out AM-AL-14A.trim.merged.fastq.gz " }