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"CGGAC":31968, "CGGAG":64730, "CGGTA":28941, "CGGTT":45678, "CGGTC":45724, "CGGTG":56662, "CGGCA":62113, "CGGCT":65712, "CGGCC":68899, "CGGCG":89349, "CGGGA":48841, "CGGGT":42570, "CGGGC":54076, "CGGGG":61254, "GAAAA":89346, "GAAAT":55453, "GAAAC":58671, "GAAAG":69041, "GAATA":34715, "GAATT":37792, "GAATC":40766, "GAATG":36262, "GAACA":58555, "GAACT":129255, "GAACC":61238, "GAACG":39288, "GAAGA":356324, "GAAGT":43763, "GAAGC":80465, "GAAGG":77831, "GATAA":41978, "GATAT":31527, "GATAC":26773, "GATAG":39984, "GATTA":28099, "GATTT":53083, "GATTC":43017, "GATTG":44416, "GATCA":60284, "GATCT":39730, "GATCC":44500, "GATCG":335969, "GATGA":68035, "GATGT":40385, "GATGC":46209, "GATGG":63481, "GACAA":53026, "GACAT":42789, "GACAC":30005, "GACAG":42104, "GACTA":21913, "GACTT":37666, "GACTC":28148, "GACTG":33739, "GACCA":56173, "GACCT":43976, "GACCC":51677, "GACCG":46728, "GACGA":58090, "GACGT":29539, "GACGC":40474, "GACGG":47069, "GAGAA":78954, "GAGAT":117330, "GAGAC":49351, "GAGAG":48901, "GAGTA":21366, "GAGTT":39396, "GAGTC":25728, "GAGTG":23749, "GAGCA":265488, "GAGCT":40656, "GAGCC":52019, "GAGCG":41019, "GAGGA":94804, "GAGGT":53368, "GAGGC":66850, "GAGGG":51779, "GTAAA":24088, "GTAAT":19269, "GTAAC":22312, "GTAAG":20153, "GTATA":13860, "GTATT":26098, "GTATC":22981, "GTATG":21863, "GTACA":19296, "GTACT":18233, "GTACC":21603, "GTACG":19345, "GTAGA":58416, "GTAGT":21859, "GTAGC":27850, "GTAGG":28653, "GTTAA":19179, "GTTAT":25069, "GTTAC":21892, "GTTAG":22806, "GTTTA":26547, "GTTTT":65909, "GTTTC":54383, "GTTTG":59863, "GTTCA":42779, "GTTCT":50087, "GTTCC":58265, "GTTCG":41755, "GTTGA":54584, "GTTGT":52431, "GTTGC":49950, "GTTGG":73483, "GTCAA":43340, "GTCAT":33348, "GTCAC":61751, "GTCAG":37747, "GTCTA":25070, "GTCTT":47718, "GTCTC":44045, "GTCTG":161531, "GTCCA":43071, "GTCCT":41928, "GTCCC":35890, "GTCCG":31879, "GTCGA":42367, "GTCGT":39217, "GTCGC":40111, "GTCGG":44310, "GTGAA":48936, "GTGAT":42817, "GTGAC":26817, "GTGAG":34981, "GTGTA":16566, "GTGTT":39187, "GTGTC":23499, "GTGTG":30841, "GTGCA":29397, "GTGCT":41183, "GTGCC":40103, "GTGCG":32552, "GTGGA":54388, "GTGGT":59153, "GTGGC":53668, "GTGGG":62683, "GCAAA":57700, "GCAAT":36637, "GCAAC":54734, "GCAAG":55423, "GCATA":27870, "GCATT":35390, "GCATC":45029, "GCATG":34321, "GCACA":223071, "GCACT":25615, "GCACC":62434, "GCACG":34616, "GCAGA":84477, "GCAGT":32442, "GCAGC":67937, "GCAGG":81607, "GCTAA":21508, "GCTAT":31296, "GCTAC":31221, "GCTAG":25874, "GCTTA":28909, "GCTTT":59330, "GCTTC":81914, "GCTTG":61664, "GCTCA":45576, "GCTCT":40490, "GCTCC":63007, "GCTCG":46898, "GCTGA":56610, "GCTGT":47484, "GCTGC":68014, "GCTGG":94780, "GCCAA":77886, "GCCAT":51760, "GCCAC":63199, "GCCAG":82682, "GCCTA":34305, "GCCTT":59213, "GCCTC":67212, "GCCTG":70542, "GCCCA":77415, "GCCCT":55869, "GCCCC":64408, "GCCCG":59963, "GCCGA":71545, "GCCGT":53591, "GCCGC":88514, "GCCGG":76528, "GCGAA":51560, "GCGAT":44884, "GCGAC":44896, "GCGAG":48740, "GCGTA":22924, "GCGTT":36630, "GCGTC":36594, "GCGTG":36863, "GCGCA":42090, "GCGCT":43173, "GCGCC":64877, "GCGCG":46617, "GCGGA":59613, "GCGGT":56211, "GCGGC":82031, "GCGGG":66731, "GGAAA":71280, "GGAAT":45441, "GGAAC":56134, "GGAAG":331283, "GGATA":43059, "GGATT":48709, "GGATC":38645, "GGATG":59765, "GGACA":41987, "GGACT":31102, "GGACC":37483, "GGACG":42937, "GGAGA":114822, "GGAGT":34766, "GGAGC":58161, "GGAGG":100653, "GGTAA":25867, "GGTAT":26720, "GGTAC":22421, "GGTAG":45780, "GGTTA":27424, "GGTTT":71594, "GGTTC":54444, "GGTTG":80128, "GGTCA":43957, "GGTCT":49546, "GGTCC":35396, "GGTCG":45922, "GGTGA":66399, "GGTGT":44706, "GGTGC":52969, "GGTGG":90214, "GGCAA":61343, "GGCAT":47495, "GGCAC":40605, "GGCAG":73965, "GGCTA":37165, "GGCTT":73292, "GGCTC":51104, "GGCTG":84908, "GGCCA":62770, "GGCCT":51800, "GGCCC":49932, "GGCCG":67953, "GGCGA":77239, "GGCGT":49842, "GGCGC":63039, "GGCGG":103786, "GGGAA":54047, "GGGAT":46715, "GGGAC":36366, "GGGAG":71010, "GGGTA":28681, "GGGTT":70987, "GGGTC":41262, "GGGTG":64160, "GGGCA":56342, "GGGCT":57183, "GGGCC":46175, "GGGCG":65498, "GGGGA":61757, "GGGGT":63544, "GGGGC":54432, "GGGGG":93416 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 921207, "total_bases": 56193627, "q20_bases": 54891844, "q30_bases": 52537547, "total_cycles": 61, "quality_curves": { "A":[39.1902,38.9229,39.0719,38.9593,38.8816,38.9392,39.0129,38.8733,39.0399,39.0403,39.0686,39.06,39.0839,39.0766,39.0598,39.0541,39.0838,39.0659,39.0801,39.0503,38.6231,39.0184,39.0721,39.0798,38.6627,39.0226,39.0649,38.5914,38.958,38.7685,39.0086,39.0258,38.9757,39.0134,38.9985,38.9642,38.8845,38.5721,38.5245,38.8486,38.8225,38.7328,38.6647,38.5965,38.4899,38.2936,37.9948,37.7948,38.0749,37.8348,37.6653,37.5,37.3612,36.9862,36.9329,36.6723,36.4824,36.2464,36.1155,35.6596,35.4652], 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"GC":[0.583809,0.526801,0.589632,0.58579,0.587195,0.532693,0.539867,0.517536,0.510188,0.523317,0.532389,0.525586,0.535028,0.539586,0.534893,0.543408,0.543271,0.536549,0.546651,0.543582,0.539122,0.545637,0.544545,0.535135,0.544217,0.545166,0.535355,0.543404,0.543701,0.537635,0.543328,0.540608,0.536755,0.537129,0.543647,0.535667,0.540251,0.540745,0.534757,0.538902,0.538698,0.535752,0.537723,0.535748,0.533224,0.536579,0.53797,0.532818,0.536659,0.539184,0.531299,0.532539,0.536574,0.533834,0.532474,0.536705,0.534487,0.534878,0.53654,0.530762,0.53229,0.536073,0.53171,0.538439,0.535805,0.531253,0.539463,0.538772,0.534944,0.539847,0.539531,0.534708,0.539276,0.544784,0.536699,0.544747,0.543507,0.542146,0.539334,0.546198,0.541471,0.545472,0.558941,0.55631,0.567933,0.580753,0.572292,0.585928,0.574884,0.560674,0.50499] }, "kmer_count": { "AAAAA":59152, "AAAAT":37836, "AAAAC":50752, "AAAAG":42447, "AAATA":22434, "AAATT":24795, "AAATC":32904, "AAATG":27439, "AAACA":40818, "AAACT":26389, 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"CTTGC":31393, "CTTGG":42650, "CTCAA":32795, "CTCAT":24617, "CTCAC":23377, "CTCAG":25646, "CTCTA":16116, "CTCTT":36457, "CTCTC":29728, "CTCTG":28767, "CTCCA":49469, "CTCCT":70068, "CTCCC":46665, "CTCCG":38818, "CTCGA":29291, "CTCGT":23359, "CTCGC":28759, "CTCGG":30290, "CTGAA":31323, "CTGAT":24486, "CTGAC":21148, "CTGAG":24370, "CTGTA":10893, "CTGTT":37798, "CTGTC":21405, "CTGTG":22829, "CTGCA":32081, "CTGCT":55955, "CTGCC":46589, "CTGCG":30646, "CTGGA":44426, "CTGGT":42042, "CTGGC":43260, "CTGGG":41772, "CCAAA":57004, "CCAAT":27219, "CCAAC":64877, "CCAAG":45452, "CCATA":21535, "CCATT":26679, "CCATC":43297, "CCATG":29201, "CCACA":49643, "CCACT":22875, "CCACC":86574, "CCACG":32634, "CCAGA":42547, "CCAGT":29581, "CCAGC":70267, "CCAGG":42382, "CCTAA":15363, "CCTAT":17590, "CCTAC":20976, "CCTAG":14182, "CCTTA":13962, "CCTTT":39418, "CCTTC":54286, "CCTTG":39384, "CCTCA":40881, "CCTCT":37164, "CCTCC":78452, "CCTCG":37504, "CCTGA":31073, "CCTGT":33010, "CCTGC":61444, "CCTGG":43975, "CCCAA":61347, "CCCAT":32593, "CCCAC":59561, "CCCAG":47391, "CCCTA":19550, "CCCTT":32157, "CCCTC":42921, "CCCTG":36360, "CCCCA":61555, "CCCCT":37776, "CCCCC":45402, "CCCCG":43401, "CCCGA":31541, "CCCGT":23374, "CCCGC":51365, "CCCGG":37579, "CCGAA":33312, "CCGAT":26384, "CCGAC":30521, "CCGAG":30728, "CCGTA":14666, "CCGTT":24247, "CCGTC":31775, "CCGTG":22643, "CCGCA":37811, "CCGCT":36497, "CCGCC":80344, "CCGCG":32854, "CCGGA":33558, "CCGGT":31456, "CCGGC":48738, "CCGGG":34650, "CGAAA":32193, "CGAAT":18339, "CGAAC":25917, "CGAAG":35369, "CGATA":16682, "CGATT":25132, "CGATC":26004, "CGATG":33745, "CGACA":25320, "CGACT":20099, "CGACC":33696, "CGACG":31498, "CGAGA":27044, "CGAGT":15942, "CGAGC":27307, "CGAGG":32934, "CGTAA":13423, "CGTAT":11604, "CGTAC":10427, "CGTAG":14279, "CGTTA":9595, "CGTTT":23623, "CGTTC":24247, "CGTTG":25852, "CGTCA":22288, "CGTCT":24729, "CGTCC":26913, "CGTCG":29022, "CGTGA":18682, "CGTGT":13106, "CGTGC":18396, "CGTGG":27276, "CGCAA":24941, "CGCAT":18253, "CGCAC":23785, "CGCAG":28725, "CGCTA":12243, "CGCTT":29974, "CGCTC":26729, "CGCTG":33248, "CGCCA":49166, "CGCCT":45917, "CGCCC":49988, "CGCCG":55660, "CGCGA":22803, "CGCGT":15379, "CGCGC":28654, "CGCGG":31408, "CGGAA":31154, "CGGAT":24104, "CGGAC":18028, "CGGAG":32825, "CGGTA":15891, "CGGTT":29284, "CGGTC":28098, "CGGTG":34306, "CGGCA":34880, "CGGCT":40951, "CGGCC":41545, "CGGCG":52268, "CGGGA":27687, "CGGGT":26492, "CGGGC":31947, "CGGGG":36359, "GAAAA":55524, "GAAAT":33534, "GAAAC":36135, "GAAAG":37121, "GAATA":20014, "GAATT":23396, "GAATC":24963, "GAATG":21919, "GAACA":32993, "GAACT":25806, "GAACC":37659, "GAACG":22546, "GAAGA":53864, "GAAGT":25258, "GAAGC":47627, "GAAGG":45496, "GATAA":23333, "GATAT":18510, "GATAC":15339, "GATAG":18184, "GATTA":16664, "GATTT":34418, "GATTC":27221, "GATTG":27294, "GATCA":26183, "GATCT":25066, "GATCC":26450, "GATCG":22998, "GATGA":40596, "GATGT":23915, "GATGC":27720, "GATGG":39055, "GACAA":32404, "GACAT":19774, "GACAC":17752, "GACAG":21537, "GACTA":11795, "GACTT":23821, "GACTC":16366, "GACTG":18741, "GACCA":34114, "GACCT":25529, "GACCC":32319, "GACCG":28339, "GACGA":33316, "GACGT":17461, "GACGC":23363, "GACGG":27817, "GAGAA":46049, "GAGAT":29408, "GAGAC":29426, "GAGAG":26041, "GAGTA":11375, "GAGTT":23167, "GAGTC":14896, "GAGTG":13596, "GAGCA":32339, "GAGCT":22194, "GAGCC":31081, "GAGCG":23193, "GAGGA":56881, "GAGGT":30561, "GAGGC":38580, "GAGGG":30730, "GTAAA":13549, "GTAAT":11524, "GTAAC":12345, "GTAAG":9460, "GTATA":7379, "GTATT":15744, "GTATC":13818, "GTATG":13231, "GTACA":10220, "GTACT":10261, "GTACC":12559, "GTACG":10650, "GTAGA":18631, "GTAGT":12280, "GTAGC":15795, "GTAGG":16735, "GTTAA":10922, "GTTAT":15462, "GTTAC":13874, "GTTAG":9631, "GTTTA":14578, "GTTTT":43706, "GTTTC":34849, "GTTTG":39628, "GTTCA":24995, "GTTCT":32056, "GTTCC":37563, "GTTCG":25840, "GTTGA":33392, "GTTGT":34421, "GTTGC":31695, "GTTGG":49979, "GTCAA":24295, "GTCAT":20305, "GTCAC":16853, "GTCAG":18548, "GTCTA":13386, "GTCTT":30241, "GTCTC":28989, "GTCTG":24747, "GTCCA":25228, "GTCCT":26241, "GTCCC":22497, "GTCCG":18214, "GTCGA":23683, "GTCGT":23279, "GTCGC":24026, "GTCGG":25550, "GTGAA":25931, "GTGAT":24721, "GTGAC":15366, "GTGAG":18484, "GTGTA":8613, "GTGTT":25252, "GTGTC":13935, "GTGTG":19086, "GTGCA":16733, "GTGCT":25304, "GTGCC":23577, "GTGCG":19053, "GTGGA":30721, "GTGGT":39736, "GTGGC":33468, "GTGGG":39900, "GCAAA":32053, "GCAAT":22167, "GCAAC":34135, "GCAAG":28096, "GCATA":14805, "GCATT":21641, "GCATC":26369, "GCATG":19811, "GCACA":21056, "GCACT":14973, "GCACC":40026, "GCACG":20242, "GCAGA":33412, "GCAGT":18977, "GCAGC":41654, "GCAGG":49648, "GCTAA":11776, "GCTAT":17932, "GCTAC":18004, "GCTAG":10971, "GCTTA":14711, "GCTTT":37226, "GCTTC":52606, "GCTTG":39341, "GCTCA":25988, "GCTCT":24685, "GCTCC":40573, "GCTCG":27718, "GCTGA":33037, "GCTGT":27894, "GCTGC":43006, "GCTGG":60568, "GCCAA":46239, "GCCAT":31129, "GCCAC":39893, "GCCAG":42833, "GCCTA":19118, "GCCTT":36590, "GCCTC":43394, "GCCTG":43839, "GCCCA":47076, "GCCCT":34530, "GCCCC":40907, "GCCCG":35459, "GCCGA":40279, "GCCGT":31587, "GCCGC":54266, "GCCGG":45305, "GCGAA":27961, "GCGAT":26399, "GCGAC":25576, "GCGAG":24675, "GCGTA":11032, "GCGTT":21538, "GCGTC":20765, "GCGTG":21100, "GCGCA":23313, "GCGCT":25227, "GCGCC":39153, "GCGCG":26797, "GCGGA":32616, "GCGGT":34934, "GCGGC":49072, "GCGGG":41094, "GGAAA":41887, "GGAAT":28049, "GGAAC":34725, "GGAAG":42049, "GGATA":22833, "GGATT":31436, "GGATC":23591, "GGATG":35795, "GGACA":23698, "GGACT":17642, "GGACC":21492, "GGACG":24313, "GGAGA":51503, "GGAGT":19958, "GGAGC":33849, "GGAGG":60816, "GGTAA":13557, "GGTAT":16092, "GGTAC":12927, "GGTAG":21370, "GGTTA":14794, "GGTTT":48376, "GGTTC":35165, "GGTTG":54308, "GGTCA":24934, "GGTCT":32165, "GGTCC":21502, "GGTCG":27975, "GGTGA":36540, "GGTGT":29201, "GGTGC":32463, "GGTGG":60696, "GGCAA":34874, "GGCAT":27939, "GGCAC":24067, "GGCAG":37991, "GGCTA":20137, "GGCTT":45851, "GGCTC":31016, "GGCTG":52921, "GGCCA":34946, "GGCCT":31523, "GGCCC":29195, "GGCCG":38882, "GGCGA":43427, "GGCGT":28891, "GGCGC":36135, "GGCGG":65066, "GGGAA":30841, "GGGAT":28387, "GGGAC":20418, "GGGAG":35685, "GGGTA":15328, "GGGTT":48410, "GGGTC":26238, "GGGTG":39570, "GGGCA":31757, "GGGCT":35743, "GGGCC":26737, "GGGCG":38851, "GGGGA":34547, "GGGGT":40410, "GGGGC":33386, "GGGGG":30198 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-13C_S85_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-13C_S85_R2_001.fastq.gz -o AM-AL-13C.trim.R1.fastq.gz -O AM-AL-13C.trim.R2.fastq.gz -m --merged_out AM-AL-13C.trim.merged.fastq.gz " }