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"CGGAT":45445, "CGGAC":33867, "CGGAG":72249, "CGGTA":52204, "CGGTT":53655, "CGGTC":49937, "CGGTG":62521, "CGGCA":69331, "CGGCT":73821, "CGGCC":73673, "CGGCG":91571, "CGGGA":53641, "CGGGT":48326, "CGGGC":57820, "CGGGG":62695, "GAAAA":109844, "GAAAT":67164, "GAAAC":69083, "GAAAG":81496, "GAATA":42991, "GAATT":50065, "GAATC":49704, "GAATG":43035, "GAACA":65093, "GAACT":210741, "GAACC":69343, "GAACG":43074, "GAAGA":585586, "GAAGT":50567, "GAAGC":89785, "GAAGG":83267, "GATAA":48972, "GATAT":38236, "GATAC":29151, "GATAG":50286, "GATTA":34982, "GATTT":68949, "GATTC":52543, "GATTG":51870, "GATCA":51821, "GATCT":50316, "GATCC":49666, "GATCG":578369, "GATGA":81002, "GATGT":45560, "GATGC":50816, "GATGG":70359, "GACAA":60074, "GACAT":38351, "GACAC":31546, "GACAG":48471, "GACTA":24672, "GACTT":46404, "GACTC":30435, "GACTG":34284, "GACCA":63667, "GACCT":46541, "GACCC":56066, "GACCG":49419, "GACGA":62870, "GACGT":30881, "GACGC":42897, "GACGG":48915, "GAGAA":90709, "GAGAT":181705, "GAGAC":52413, "GAGAG":57862, "GAGTA":24421, "GAGTT":44516, "GAGTC":28437, "GAGTG":26221, "GAGCA":446130, "GAGCT":43546, "GAGCC":57450, "GAGCG":42869, "GAGGA":109086, "GAGGT":56125, "GAGGC":68964, "GAGGG":57389, "GTAAA":42241, "GTAAT":24703, "GTAAC":25093, "GTAAG":24381, "GTATA":17217, "GTATT":32424, "GTATC":27272, "GTATG":25677, "GTACA":22861, "GTACT":20313, "GTACC":25471, "GTACG":20233, "GTAGA":79758, "GTAGT":25433, "GTAGC":31380, "GTAGG":31368, "GTTAA":24358, "GTTAT":29714, "GTTAC":26682, "GTTAG":31320, "GTTTA":33416, "GTTTT":84254, "GTTTC":65950, "GTTTG":70760, "GTTCA":50637, "GTTCT":59183, "GTTCC":69957, "GTTCG":45839, "GTTGA":64930, "GTTGT":63374, "GTTGC":57218, "GTTGG":86488, "GTCAA":49511, "GTCAT":38896, "GTCAC":89854, "GTCAG":43349, "GTCTA":29752, "GTCTT":56167, "GTCTC":52131, "GTCTG":274654, "GTCCA":50806, "GTCCT":47978, "GTCCC":40355, "GTCCG":34097, "GTCGA":47794, "GTCGT":42107, "GTCGC":44078, "GTCGG":47018, "GTGAA":56398, "GTGAT":45540, "GTGAC":28225, "GTGAG":42259, "GTGTA":19089, "GTGTT":45623, "GTGTC":26696, "GTGTG":34043, "GTGCA":33160, "GTGCT":46371, "GTGCC":43872, "GTGCG":33592, "GTGGA":62671, "GTGGT":68919, "GTGGC":60382, "GTGGG":68934, "GCAAA":65519, "GCAAT":42691, "GCAAC":60636, "GCAAG":64974, "GCATA":32208, "GCATT":42974, "GCATC":49725, "GCATG":38220, "GCACA":385260, "GCACT":28539, "GCACC":66582, "GCACG":36835, "GCAGA":111665, "GCAGT":37190, "GCAGC":73378, "GCAGG":91075, "GCTAA":25995, "GCTAT":33828, "GCTAC":34095, "GCTAG":33635, "GCTTA":33499, "GCTTT":70394, "GCTTC":96462, "GCTTG":71677, "GCTCA":51108, "GCTCT":47352, "GCTCC":72297, "GCTCG":51181, "GCTGA":65030, "GCTGT":54211, "GCTGC":75870, "GCTGG":106350, "GCCAA":88880, "GCCAT":58292, "GCCAC":68479, "GCCAG":94324, "GCCTA":39423, "GCCTT":67279, "GCCTC":75010, "GCCTG":79949, "GCCCA":84280, "GCCCT":62311, "GCCCC":69149, "GCCCG":62421, "GCCGA":77882, "GCCGT":57520, "GCCGC":94492, "GCCGG":80177, "GCGAA":57889, "GCGAT":49315, "GCGAC":46094, "GCGAG":54014, "GCGTA":24570, "GCGTT":40942, "GCGTC":39795, "GCGTG":37880, "GCGCA":45833, "GCGCT":45227, "GCGCC":68427, "GCGCG":48020, "GCGGA":65745, "GCGGT":61976, "GCGGC":86198, "GCGGG":71214, "GGAAA":84525, "GGAAT":54977, "GGAAC":64283, "GGAAG":551623, "GGATA":50077, "GGATT":59788, "GGATC":45719, "GGATG":66289, "GGACA":47562, "GGACT":34825, "GGACC":40203, "GGACG":44849, "GGAGA":142877, "GGAGT":38553, "GGAGC":62109, "GGAGG":111088, "GGTAA":45465, "GGTAT":32582, "GGTAC":24934, "GGTAG":54703, "GGTTA":34185, "GGTTT":86688, "GGTTC":62784, "GGTTG":94888, "GGTCA":48586, "GGTCT":58484, "GGTCC":39182, "GGTCG":49487, "GGTGA":72722, "GGTGT":49453, "GGTGC":57128, "GGTGG":106158, "GGCAA":71696, "GGCAT":52283, "GGCAC":43880, "GGCAG":87167, "GGCTA":41865, "GGCTT":86100, "GGCTC":57054, "GGCTG":93815, "GGCCA":69843, "GGCCT":58144, "GGCCC":51549, "GGCCG":70280, "GGCGA":82041, "GGCGT":52532, "GGCGC":65493, "GGCGG":109296, "GGGAA":61277, "GGGAT":52866, "GGGAC":38124, "GGGAG":78275, "GGGTA":32543, "GGGTT":81767, "GGGTC":47507, "GGGTG":68972, "GGGCA":64753, "GGGCT":64205, "GGGCC":49702, "GGGCG":68345, "GGGGA":66564, "GGGGT":68462, "GGGGC":59444, "GGGGG":127324 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1129600, "total_bases": 68905600, "q20_bases": 66983709, "q30_bases": 63993324, "total_cycles": 61, "quality_curves": { "A":[39.3904,39.1299,39.001,39.0508,39.0784,39.1731,39.1098,38.8886,39.1328,39.1188,39.1327,39.1494,39.1649,39.146,39.1302,39.1032,39.1295,39.1212,39.1478,39.1022,38.5997,39.0612,39.1131,39.1334,38.6816,39.0845,39.1222,38.5655,38.9939,38.7828,39.1038,39.1038,39.068,38.6945,38.9184,39.0316,39.0119,39.0046,38.9527,38.8843,38.823,38.74,38.662,38.5486,38.3961,38.1558,37.7738,37.486,37.7488,37.4375,37.221,36.9721,36.8399,36.2671,36.1434,35.8349,35.5481,35.2608,35.0403,34.5192,34.2576], 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"GC":[0.55566,0.50743,0.560376,0.562689,0.565987,0.518111,0.528532,0.509056,0.501428,0.512268,0.517419,0.515414,0.52281,0.52831,0.524249,0.528774,0.531205,0.522876,0.526909,0.530264,0.526534,0.530107,0.529714,0.523591,0.52581,0.531071,0.523156,0.527633,0.526913,0.526252,0.527464,0.528144,0.52168,0.526402,0.52759,0.522403,0.524142,0.524686,0.518978,0.522239,0.52547,0.522549,0.52387,0.523838,0.521501,0.522121,0.524604,0.521596,0.520614,0.526997,0.524201,0.525775,0.523362,0.521266,0.523548,0.525448,0.523963,0.524132,0.527989,0.523384,0.525173,0.5272,0.525968,0.529774,0.526309,0.525277,0.526327,0.532859,0.532161,0.530676,0.527597,0.527369,0.532959,0.535121,0.532759,0.535313,0.534823,0.533545,0.542771,0.539456,0.540297,0.540476,0.550236,0.551858,0.561444,0.556169,0.570766,0.581257,0.572818,0.563173,0.519743] }, "kmer_count": { "AAAAA":96783, "AAAAT":61233, "AAAAC":75444, "AAAAG":68131, "AAATA":36397, "AAATT":43461, "AAATC":54093, "AAATG":42583, "AAACA":60388, "AAACT":42118, "AAACC":84040, 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"CTTGT":49531, "CTTGC":45281, "CTTGG":62248, "CTCAA":48398, "CTCAT":36190, "CTCAC":33193, "CTCAG":37229, "CTCTA":25157, "CTCTT":54812, "CTCTC":43430, "CTCTG":42062, "CTCCA":70395, "CTCCT":101805, "CTCCC":63273, "CTCCG":51872, "CTCGA":41096, "CTCGT":34894, "CTCGC":39692, "CTCGG":43276, "CTGAA":47708, "CTGAT":36731, "CTGAC":29471, "CTGAG":36077, "CTGTA":17280, "CTGTT":57110, "CTGTC":30825, "CTGTG":33412, "CTGCA":46409, "CTGCT":82536, "CTGCC":65080, "CTGCG":42026, "CTGGA":62799, "CTGGT":60553, "CTGGC":59644, "CTGGG":57296, "CCAAA":85867, "CCAAT":42422, "CCAAC":85954, "CCAAG":65609, "CCATA":33482, "CCATT":42445, "CCATC":59224, "CCATG":41869, "CCACA":63426, "CCACT":32572, "CCACC":108529, "CCACG":43552, "CCAGA":59185, "CCAGT":42443, "CCAGC":93302, "CCAGG":59202, "CCTAA":23901, "CCTAT":26369, "CCTAC":30646, "CCTAG":18692, "CCTTA":21178, "CCTTT":61114, "CCTTC":76723, "CCTTG":56873, "CCTCA":57105, "CCTCT":51882, "CCTCC":109508, "CCTCG":52568, "CCTGA":45686, "CCTGT":48565, "CCTGC":89049, "CCTGG":61219, "CCCAA":84217, "CCCAT":45589, "CCCAC":71819, "CCCAG":63463, "CCCTA":28203, "CCCTT":46094, "CCCTC":58188, "CCCTG":51990, "CCCCA":78025, "CCCCT":52147, "CCCCC":54454, "CCCCG":55283, "CCCGA":41683, "CCCGT":31711, "CCCGC":66251, "CCCGG":50916, "CCGAA":46990, "CCGAT":37546, "CCGAC":39537, "CCGAG":42021, "CCGTA":21948, "CCGTT":34854, "CCGTC":42122, "CCGTG":32386, "CCGCA":47955, "CCGCT":49686, "CCGCC":100679, "CCGCG":45759, "CCGGA":45808, "CCGGT":42140, "CCGGC":65147, "CCGGG":47349, "CGAAA":48676, "CGAAT":28893, "CGAAC":36427, "CGAAG":50487, "CGATA":24784, "CGATT":35343, "CGATC":37244, "CGATG":46994, "CGACA":32638, "CGACT":29033, "CGACC":45106, "CGACG":41714, "CGAGA":39670, "CGAGT":23350, "CGAGC":36712, "CGAGG":43674, "CGTAA":21362, "CGTAT":17188, "CGTAC":15219, "CGTAG":22084, "CGTTA":14805, "CGTTT":36089, "CGTTC":35141, "CGTTG":36288, "CGTCA":31274, "CGTCT":34310, "CGTCC":37725, "CGTCG":39950, "CGTGA":27199, "CGTGT":18867, "CGTGC":25688, "CGTGG":37380, "CGCAA":34950, "CGCAT":25491, "CGCAC":29138, "CGCAG":38994, "CGCTA":17302, "CGCTT":42874, "CGCTC":37083, "CGCTG":46500, "CGCCA":64342, "CGCCT":62280, "CGCCC":62660, "CGCCG":73252, "CGCGA":31537, "CGCGT":22336, "CGCGC":38288, "CGCGG":44896, "CGGAA":44681, "CGGAT":34614, "CGGAC":24755, "CGGAG":44407, "CGGTA":22855, "CGGTT":42620, "CGGTC":38351, "CGGTG":48145, "CGGCA":48517, "CGGCT":58225, "CGGCC":55889, "CGGCG":67887, "CGGGA":38348, "CGGGT":37528, "CGGGC":43229, "CGGGG":46559, "GAAAA":86603, "GAAAT":53074, "GAAAC":54392, "GAAAG":55437, "GAATA":32014, "GAATT":40549, "GAATC":39226, "GAATG":33490, "GAACA":48337, "GAACT":38363, "GAACC":52760, "GAACG":32453, "GAAGA":79352, "GAAGT":38306, "GAAGC":68332, "GAAGG":64244, "GATAA":36920, "GATAT":30185, "GATAC":22317, "GATAG":27961, "GATTA":25905, "GATTT":56181, "GATTC":41848, "GATTG":40660, "GATCA":38084, "GATCT":39837, "GATCC":37559, "GATCG":34331, "GATGA":61457, "GATGT":35436, "GATGC":38912, "GATGG":54398, "GACAA":45487, "GACAT":28752, "GACAC":23581, "GACAG":29073, "GACTA":17009, "GACTT":37475, "GACTC":22866, "GACTG":25491, "GACCA":47240, "GACCT":34623, "GACCC":43435, "GACCG":37598, "GACGA":45626, "GACGT":23215, "GACGC":32140, "GACGG":37397, "GAGAA":67622, "GAGAT":45329, "GAGAC":39869, "GAGAG":37513, "GAGTA":16680, "GAGTT":34690, "GAGTC":21789, "GAGTG":19674, "GAGCA":45134, "GAGCT":32171, "GAGCC":43148, "GAGCG":31065, "GAGGA":80737, "GAGGT":41880, "GAGGC":51445, "GAGGG":43426, "GTAAA":22226, "GTAAT":18939, "GTAAC":18464, "GTAAG":14838, "GTATA":12054, "GTATT":25468, "GTATC":21133, "GTATG":20244, "GTACA":16618, "GTACT":15399, "GTACC":19138, "GTACG":14994, "GTAGA":27690, "GTAGT":19671, "GTAGC":23516, "GTAGG":23711, "GTTAA":18665, "GTTAT":23544, "GTTAC":21183, "GTTAG":15941, "GTTTA":23471, "GTTTT":69257, "GTTTC":52840, "GTTTG":58329, "GTTCA":37897, "GTTCT":47605, "GTTCC":56289, "GTTCG":35574, "GTTGA":49454, "GTTGT":51425, "GTTGC":45311, "GTTGG":70508, "GTCAA":35698, "GTCAT":30145, "GTCAC":23107, "GTCAG":26338, "GTCTA":20210, "GTCTT":44573, "GTCTC":42650, "GTCTG":34481, "GTCCA":37120, "GTCCT":37827, "GTCCC":32039, "GTCCG":25407, "GTCGA":33939, "GTCGT":31786, "GTCGC":32726, "GTCGG":35307, "GTGAA":40162, "GTGAT":34013, "GTGAC":21053, "GTGAG":27622, "GTGTA":12911, "GTGTT":36424, "GTGTC":20479, "GTGTG":26104, "GTGCA":24170, "GTGCT":36111, "GTGCC":33219, "GTGCG":25402, "GTGGA":45785, "GTGGT":54726, "GTGGC":47221, "GTGGG":53136, "GCAAA":48011, "GCAAT":33399, "GCAAC":47263, "GCAAG":40728, "GCATA":22283, "GCATT":34369, "GCATC":37553, "GCATG":29471, "GCACA":28751, "GCACT":21388, "GCACC":51408, "GCACG":27209, "GCAGA":46409, "GCAGT":28582, "GCAGC":56648, "GCAGG":69866, "GCTAA":18672, "GCTAT":25874, "GCTAC":26055, "GCTAG":15967, "GCTTA":22641, "GCTTT":56648, "GCTTC":77223, "GCTTG":56985, "GCTCA":37428, "GCTCT":36190, "GCTCC":57305, "GCTCG":38597, "GCTGA":47728, "GCTGT":41428, "GCTGC":59609, "GCTGG":83569, "GCCAA":64827, "GCCAT":44908, "GCCAC":52969, "GCCAG":57684, "GCCTA":26941, "GCCTT":52226, "GCCTC":59266, "GCCTG":61592, "GCCCA":61814, "GCCCT":48070, "GCCCC":53799, "GCCCG":46486, "GCCGA":55159, "GCCGT":43171, "GCCGC":71081, "GCCGG":59814, "GCGAA":40467, "GCGAT":37189, "GCGAC":34374, "GCGAG":33286, "GCGTA":16255, "GCGTT":31479, "GCGTC":29083, "GCGTG":28115, "GCGCA":32041, "GCGCT":33948, "GCGCC":52220, "GCGCG":35361, "GCGGA":45457, "GCGGT":48289, "GCGGC":65471, "GCGGG":54265, "GGAAA":63525, "GGAAT":43689, "GGAAC":49255, "GGAAG":60525, "GGATA":35284, "GGATT":48387, "GGATC":35370, "GGATG":50797, "GGACA":33880, "GGACT":26739, "GGACC":30479, "GGACG":32792, "GGAGA":70885, "GGAGT":29101, "GGAGC":47022, "GGAGG":84179, "GGTAA":20777, "GGTAT":24910, "GGTAC":18905, "GGTAG":29772, "GGTTA":23536, "GGTTT":71752, "GGTTC":49940, "GGTTG":77006, "GGTCA":34834, "GGTCT":46449, "GGTCC":30215, "GGTCG":37184, "GGTGA":51699, "GGTGT":39054, "GGTGC":44608, "GGTGG":84362, "GGCAA":51656, "GGCAT":40360, "GGCAC":32640, "GGCAG":53367, "GGCTA":28545, "GGCTT":68829, "GGCTC":44216, "GGCTG":73282, "GGCCA":48540, "GGCCT":44738, "GGCCC":38817, "GGCCG":51410, "GGCGA":58566, "GGCGT":39584, "GGCGC":48602, "GGCGG":83525, "GGGAA":44155, "GGGAT":41156, "GGGAC":28041, "GGGAG":48681, "GGGTA":21244, "GGGTT":66370, "GGGTC":37203, "GGGTG":52254, "GGGCA":45741, "GGGCT":50356, "GGGCC":36981, "GGGCG":51166, "GGGGA":46856, "GGGGT":51817, "GGGGC":45607, "GGGGG":39609 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-12C_S82_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-12C_S82_R2_001.fastq.gz -o AM-AL-12C.trim.R1.fastq.gz -O AM-AL-12C.trim.R2.fastq.gz -m --merged_out AM-AL-12C.trim.merged.fastq.gz " }