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"CGGAC":25125, "CGGAG":51938, "CGGTA":24454, "CGGTT":38277, "CGGTC":34966, "CGGTG":43964, "CGGCA":51310, "CGGCT":51172, "CGGCC":49973, "CGGCG":66983, "CGGGA":39455, "CGGGT":33839, "CGGGC":40046, "CGGGG":42831, "GAAAA":91840, "GAAAT":53532, "GAAAC":55746, "GAAAG":65344, "GAATA":34745, "GAATT":40442, "GAATC":38579, "GAATG":34541, "GAACA":51924, "GAACT":145786, "GAACC":52683, "GAACG":33171, "GAAGA":410955, "GAAGT":39727, "GAAGC":69404, "GAAGG":64560, "GATAA":37512, "GATAT":29925, "GATAC":22908, "GATAG":37185, "GATTA":28407, "GATTT":54100, "GATTC":39872, "GATTG":39189, "GATCA":38996, "GATCT":36411, "GATCC":36096, "GATCG":400171, "GATGA":60271, "GATGT":35417, "GATGC":38110, "GATGG":53509, "GACAA":48151, "GACAT":31373, "GACAC":25183, "GACAG":36741, "GACTA":19975, "GACTT":35801, "GACTC":23004, "GACTG":27127, "GACCA":47993, "GACCT":35425, "GACCC":41692, "GACCG":36577, "GACGA":48906, "GACGT":24074, "GACGC":32093, "GACGG":37348, "GAGAA":73228, "GAGAT":130334, "GAGAC":40580, "GAGAG":44087, "GAGTA":19957, "GAGTT":35589, "GAGTC":21185, "GAGTG":21188, "GAGCA":305502, "GAGCT":33461, "GAGCC":41811, "GAGCG":31896, "GAGGA":81785, "GAGGT":42012, "GAGGC":51335, "GAGGG":42620, "GTAAA":23541, "GTAAT":19255, "GTAAC":18983, "GTAAG":18791, "GTATA":13816, "GTATT":24754, "GTATC":21097, "GTATG":20509, "GTACA":17014, "GTACT":15348, "GTACC":18285, "GTACG":15520, "GTAGA":57240, "GTAGT":19450, "GTAGC":23061, "GTAGG":23833, "GTTAA":19599, "GTTAT":41254, "GTTAC":19359, "GTTAG":23503, "GTTTA":26669, "GTTTT":66623, "GTTTC":50392, "GTTTG":54157, "GTTCA":39478, "GTTCT":44829, "GTTCC":49014, "GTTCG":33449, "GTTGA":50685, "GTTGT":47742, "GTTGC":41076, "GTTGG":62420, "GTCAA":39235, "GTCAT":28996, "GTCAC":63029, "GTCAG":32665, "GTCTA":22509, "GTCTT":42877, "GTCTC":36482, "GTCTG":184500, "GTCCA":36089, "GTCCT":33103, "GTCCC":27911, "GTCCG":24279, "GTCGA":35467, "GTCGT":31285, "GTCGC":32305, "GTCGG":34361, "GTGAA":43058, "GTGAT":34065, "GTGAC":22637, "GTGAG":30840, "GTGTA":15507, "GTGTT":36016, "GTGTC":19976, "GTGTG":26247, "GTGCA":25274, "GTGCT":32692, "GTGCC":31562, "GTGCG":23969, "GTGGA":47067, "GTGGT":49822, "GTGGC":43217, "GTGGG":48178, "GCAAA":53489, "GCAAT":33630, "GCAAC":46988, "GCAAG":50682, "GCATA":25937, "GCATT":33451, "GCATC":45128, "GCATG":28929, "GCACA":262578, "GCACT":21832, "GCACC":46743, "GCACG":27090, "GCAGA":83060, "GCAGT":28339, "GCAGC":53182, "GCAGG":64050, "GCTAA":20500, "GCTAT":26453, "GCTAC":25506, "GCTAG":24545, "GCTTA":26147, "GCTTT":54272, "GCTTC":68554, "GCTTG":51792, "GCTCA":39046, "GCTCT":34402, "GCTCC":48959, "GCTCG":35698, "GCTGA":49244, "GCTGT":39206, "GCTGC":52084, "GCTGG":73594, "GCCAA":67026, "GCCAT":43378, "GCCAC":49603, "GCCAG":68194, "GCCTA":30346, "GCCTT":49736, "GCCTC":52157, "GCCTG":54568, "GCCCA":59662, "GCCCT":43999, "GCCCC":46067, "GCCCG":42707, "GCCGA":57674, "GCCGT":41109, "GCCGC":64611, "GCCGG":55476, "GCGAA":45083, "GCGAT":37135, "GCGAC":35800, "GCGAG":40725, "GCGTA":18849, "GCGTT":30783, "GCGTC":29317, "GCGTG":28087, "GCGCA":33827, "GCGCT":33506, "GCGCC":48394, "GCGCG":35659, "GCGGA":47791, "GCGGT":42777, "GCGGC":61185, "GCGGG":48789, "GGAAA":67259, "GGAAT":43137, "GGAAC":48083, "GGAAG":382778, "GGATA":37136, "GGATT":45502, "GGATC":33013, "GGATG":49718, "GGACA":36664, "GGACT":26121, "GGACC":29166, "GGACG":33242, "GGAGA":106381, "GGAGT":29982, "GGAGC":45933, "GGAGG":80245, "GGTAA":22887, "GGTAT":24189, "GGTAC":18040, "GGTAG":37798, "GGTTA":26316, "GGTTT":65454, "GGTTC":45284, "GGTTG":66336, "GGTCA":36131, "GGTCT":41378, "GGTCC":26895, "GGTCG":35865, "GGTGA":53119, "GGTGT":36799, "GGTGC":39657, "GGTGG":71951, "GGCAA":55630, "GGCAT":47579, "GGCAC":32700, "GGCAG":62401, "GGCTA":31948, "GGCTT":61679, "GGCTC":40368, "GGCTG":66276, "GGCCA":49683, "GGCCT":39995, "GGCCC":35392, "GGCCG":48745, "GGCGA":62509, "GGCGT":38751, "GGCGC":46926, "GGCGG":76482, "GGGAA":47359, "GGGAT":39104, "GGGAC":27843, "GGGAG":58113, "GGGTA":24038, "GGGTT":58020, "GGGTC":33045, "GGGTG":48381, "GGGCA":46501, "GGGCT":44605, "GGGCC":33888, "GGGCG":48280, "GGGGA":48667, "GGGGT":46550, "GGGGC":41159, "GGGGG":86822 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 838821, "total_bases": 51168081, "q20_bases": 49828977, "q30_bases": 47646868, "total_cycles": 61, "quality_curves": { "A":[39.2742,39.1836,38.9433,39.0094,39.0607,38.9924,39.01,38.786,39.0614,39.0653,39.0814,39.038,39.0857,39.0813,39.0936,39.0567,39.0599,39.054,39.0781,39.0598,38.6323,39.0319,39.0528,39.0684,38.6232,39.0449,39.0737,38.5652,38.9817,38.698,39.003,39.0325,38.976,39.0235,38.8476,38.9357,38.56,38.9539,38.6134,38.5285,38.7742,38.6621,38.626,38.5251,38.3751,38.1369,37.797,37.6446,37.8321,37.5613,37.3263,37.0942,36.9551,36.4961,36.3031,35.9821,35.7492,35.3765,35.1625,34.5983,34.3355], 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"CCTGG":41546, "CCCAA":62121, "CCCAT":32930, "CCCAC":51040, "CCCAG":44308, "CCCTA":20878, "CCCTT":33971, "CCCTC":41220, "CCCTG":35324, "CCCCA":55078, "CCCCT":35373, "CCCCC":37941, "CCCCG":36671, "CCCGA":30693, "CCCGT":21631, "CCCGC":43825, "CCCGG":33102, "CCGAA":36257, "CCGAT":28006, "CCGAC":29617, "CCGAG":30492, "CCGTA":15835, "CCGTT":24987, "CCGTC":28669, "CCGTG":22822, "CCGCA":35463, "CCGCT":33977, "CCGCC":66479, "CCGCG":30908, "CCGGA":31760, "CCGGT":28296, "CCGGC":43485, "CCGGG":31662, "CGAAA":38864, "CGAAT":22394, "CGAAC":27333, "CGAAG":38862, "CGATA":19294, "CGATT":27857, "CGATC":27397, "CGATG":34431, "CGACA":25870, "CGACT":21072, "CGACC":33510, "CGACG":31207, "CGAGA":30229, "CGAGT":17582, "CGAGC":26827, "CGAGG":32735, "CGTAA":15451, "CGTAT":13360, "CGTAC":10955, "CGTAG":16667, "CGTTA":11871, "CGTTT":28049, "CGTTC":25249, "CGTTG":27048, "CGTCA":23465, "CGTCT":24610, "CGTCC":25206, "CGTCG":28593, "CGTGA":19974, "CGTGT":14919, "CGTGC":17807, "CGTGG":26841, "CGCAA":27450, "CGCAT":19602, "CGCAC":21346, "CGCAG":28394, "CGCTA":13432, "CGCTT":31142, "CGCTC":25713, "CGCTG":32760, "CGCCA":45805, "CGCCT":42740, "CGCCC":42392, "CGCCG":49738, "CGCGA":23084, "CGCGT":16170, "CGCGC":26842, "CGCGG":29858, "CGGAA":33516, "CGGAT":24932, "CGGAC":18185, "CGGAG":31907, "CGGTA":16385, "CGGTT":30081, "CGGTC":26278, "CGGTG":32905, "CGGCA":35705, "CGGCT":39264, "CGGCC":37172, "CGGCG":48730, "CGGGA":27515, "CGGGT":25931, "CGGGC":29428, "CGGGG":31235, "GAAAA":73248, "GAAAT":41879, "GAAAC":43501, "GAAAG":45028, "GAATA":25904, "GAATT":32487, "GAATC":30003, "GAATG":26790, "GAACA":38734, "GAACT":30102, "GAACC":40094, "GAACG":24719, "GAAGA":63570, "GAAGT":30158, "GAAGC":52960, "GAAGG":49008, "GATAA":27723, "GATAT":23059, "GATAC":17240, "GATAG":21719, "GATTA":21489, "GATTT":43923, "GATTC":31442, "GATTG":30476, "GATCA":28913, "GATCT":28342, "GATCC":27508, "GATCG":25066, "GATGA":45001, "GATGT":26721, "GATGC":29065, "GATGG":41183, "GACAA":36544, "GACAT":23375, "GACAC":19146, "GACAG":22707, "GACTA":13781, "GACTT":28482, "GACTC":17102, "GACTG":20201, "GACCA":35371, "GACCT":26241, "GACCC":31843, "GACCG":27482, "GACGA":35502, "GACGT":17700, "GACGC":23630, "GACGG":28117, "GAGAA":54774, "GAGAT":33924, "GAGAC":31029, "GAGAG":29013, "GAGTA":13511, "GAGTT":27286, "GAGTC":15902, "GAGTG":15981, "GAGCA":34027, "GAGCT":24379, "GAGCC":31279, "GAGCG":23052, "GAGGA":60522, "GAGGT":30884, "GAGGC":37842, "GAGGG":31632, "GTAAA":17647, "GTAAT":14752, "GTAAC":14100, "GTAAG":11571, "GTATA":9801, "GTATT":19442, "GTATC":16178, "GTATG":15911, "GTACA":12232, "GTACT":11450, "GTACC":13681, "GTACG":11171, "GTAGA":21218, "GTAGT":14713, "GTAGC":17402, "GTAGG":17984, "GTTAA":14916, "GTTAT":18955, "GTTAC":15097, "GTTAG":12650, "GTTTA":19329, "GTTTT":54689, "GTTTC":40081, "GTTTG":43904, "GTTCA":29220, "GTTCT":35546, "GTTCC":38659, "GTTCG":25491, "GTTGA":38408, "GTTGT":38772, "GTTGC":32196, "GTTGG":50912, "GTCAA":27911, "GTCAT":22034, "GTCAC":17394, "GTCAG":20243, "GTCTA":15511, "GTCTT":33617, "GTCTC":29293, "GTCTG":25624, "GTCCA":26144, "GTCCT":25713, "GTCCC":21439, "GTCCG":17854, "GTCGA":25211, "GTCGT":23127, "GTCGC":23876, "GTCGG":25246, "GTGAA":30724, "GTGAT":25385, "GTGAC":16789, "GTGAG":19898, "GTGTA":10510, "GTGTT":28828, "GTGTC":15186, "GTGTG":20283, "GTGCA":18254, "GTGCT":24947, "GTGCC":23476, "GTGCG":17704, "GTGGA":33506, "GTGGT":38958, "GTGGC":33190, "GTGGG":36795, "GCAAA":39295, "GCAAT":26027, "GCAAC":36478, "GCAAG":32076, "GCATA":18082, "GCATT":26326, "GCATC":28850, "GCATG":22209, "GCACA":22859, "GCACT":16648, "GCACC":35417, "GCACG":19861, "GCAGA":36889, "GCAGT":21746, "GCAGC":40714, "GCAGG":48153, "GCTAA":14715, "GCTAT":20062, "GCTAC":18806, "GCTAG":11926, "GCTTA":17683, "GCTTT":43294, "GCTTC":54132, "GCTTG":40701, "GCTCA":28593, "GCTCT":25998, "GCTCC":38142, "GCTCG":26350, "GCTGA":36053, "GCTGT":29475, "GCTGC":39769, "GCTGG":56807, "GCCAA":48616, "GCCAT":33152, "GCCAC":38040, "GCCAG":41534, "GCCTA":20895, "GCCTT":38415, "GCCTC":40743, "GCCTG":41656, "GCCCA":43673, "GCCCT":33382, "GCCCC":34923, "GCCCG":31251, "GCCGA":40358, "GCCGT":30259, "GCCGC":47603, "GCCGG":40670, "GCGAA":31568, "GCGAT":27851, "GCGAC":26405, "GCGAG":24945, "GCGTA":12427, "GCGTT":23553, "GCGTC":21470, "GCGTG":20443, "GCGCA":23300, "GCGCT":24637, "GCGCC":36072, "GCGCG":25631, "GCGGA":32913, "GCGGT":32619, "GCGGC":45274, "GCGGG":36437, "GGAAA":50574, "GGAAT":33757, "GGAAC":37000, "GGAAG":46611, "GGATA":26094, "GGATT":36008, "GGATC":25231, "GGATG":37288, "GGACA":26425, "GGACT":19597, "GGACC":21813, "GGACG":24104, "GGAGA":54859, "GGAGT":22295, "GGAGC":34289, "GGAGG":59972, "GGTAA":15942, "GGTAT":18472, "GGTAC":13533, "GGTAG":21155, "GGTTA":18381, "GGTTT":53587, "GGTTC":35554, "GGTTG":53796, "GGTCA":25492, "GGTCT":32421, "GGTCC":20233, "GGTCG":26518, "GGTGA":37150, "GGTGT":29314, "GGTGC":30394, "GGTGG":56181, "GGCAA":40039, "GGCAT":30093, "GGCAC":24458, "GGCAG":38219, "GGCTA":21554, "GGCTT":48422, "GGCTC":30893, "GGCTG":50875, "GGCCA":34254, "GGCCT":30197, "GGCCC":25966, "GGCCG":34979, "GGCGA":44087, "GGCGT":28748, "GGCGC":33930, "GGCGG":57389, "GGGAA":34026, "GGGAT":29649, "GGGAC":20455, "GGGAG":36208, "GGGTA":15955, "GGGTT":47070, "GGGTC":25547, "GGGTG":36852, "GGGCA":32377, "GGGCT":34396, "GGGCC":24922, "GGGCG":35140, "GGGGA":34210, "GGGGT":35800, "GGGGC":30540, "GGGGG":27456 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-12B_S81_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-12B_S81_R2_001.fastq.gz -o AM-AL-12B.trim.R1.fastq.gz -O AM-AL-12B.trim.R2.fastq.gz -m --merged_out AM-AL-12B.trim.merged.fastq.gz " }