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"CGGAC":32317, "CGGAG":69185, "CGGTA":32612, "CGGTT":50644, "CGGTC":48159, "CGGTG":59640, "CGGCA":66486, "CGGCT":68779, "CGGCC":68780, "CGGCG":88330, "CGGGA":51259, "CGGGT":45413, "CGGGC":54022, "CGGGG":58240, "GAAAA":109050, "GAAAT":65676, "GAAAC":67454, "GAAAG":80685, "GAATA":42412, "GAATT":49518, "GAATC":48924, "GAATG":42492, "GAACA":64194, "GAACT":218017, "GAACC":67390, "GAACG":41521, "GAAGA":578926, "GAAGT":49090, "GAAGC":87882, "GAAGG":81735, "GATAA":46884, "GATAT":37453, "GATAC":28682, "GATAG":48352, "GATTA":35440, "GATTT":67557, "GATTC":50746, "GATTG":50442, "GATCA":49340, "GATCT":59924, "GATCC":46759, "GATCG":568407, "GATGA":77696, "GATGT":45390, "GATGC":50159, "GATGG":69256, "GACAA":59606, "GACAT":38626, "GACAC":31260, "GACAG":46997, "GACTA":24671, "GACTT":45106, "GACTC":29625, "GACTG":34142, "GACCA":61624, "GACCT":46123, "GACCC":53581, "GACCG":47503, "GACGA":61869, "GACGT":30307, "GACGC":40654, "GACGG":47307, "GAGAA":90717, "GAGAT":190211, "GAGAC":50774, "GAGAG":55949, "GAGTA":23917, "GAGTT":44029, "GAGTC":27947, "GAGTG":26080, "GAGCA":440509, "GAGCT":42376, "GAGCC":54509, "GAGCG":41117, "GAGGA":104736, "GAGGT":54399, "GAGGC":66551, "GAGGG":55908, "GTAAA":28508, "GTAAT":24249, "GTAAC":23629, "GTAAG":24621, "GTATA":17118, "GTATT":30502, "GTATC":26065, "GTATG":25194, "GTACA":21630, "GTACT":19524, "GTACC":23435, "GTACG":19637, "GTAGA":77432, "GTAGT":24683, "GTAGC":30373, "GTAGG":30544, "GTTAA":23618, "GTTAT":29825, "GTTAC":25862, "GTTAG":30564, "GTTTA":33372, "GTTTT":84115, "GTTTC":64435, "GTTTG":70610, "GTTCA":50557, "GTTCT":57926, "GTTCC":66062, "GTTCG":44188, "GTTGA":63260, "GTTGT":62219, "GTTGC":54145, "GTTGG":84074, "GTCAA":49694, "GTCAT":38306, "GTCAC":99104, "GTCAG":42806, "GTCTA":28679, "GTCTT":55717, "GTCTC":49731, "GTCTG":278114, "GTCCA":48467, "GTCCT":45883, "GTCCC":38866, "GTCCG":32127, "GTCGA":46227, "GTCGT":42071, "GTCGC":44377, "GTCGG":45932, "GTGAA":54201, "GTGAT":43774, "GTGAC":27996, "GTGAG":40830, "GTGTA":19476, "GTGTT":46518, "GTGTC":26213, "GTGTG":33747, "GTGCA":31980, "GTGCT":43482, "GTGCC":41483, "GTGCG":31813, "GTGGA":60555, "GTGGT":67712, "GTGGC":57559, "GTGGG":65964, "GCAAA":65196, "GCAAT":41757, "GCAAC":58558, "GCAAG":64696, "GCATA":32762, "GCATT":41622, "GCATC":48880, "GCATG":37081, "GCACA":383225, "GCACT":28041, "GCACC":63403, "GCACG":35064, "GCAGA":108727, "GCAGT":35879, "GCAGC":69388, "GCAGG":85527, "GCTAA":25672, "GCTAT":34089, "GCTAC":32490, "GCTAG":33704, "GCTTA":32579, "GCTTT":68796, "GCTTC":91282, "GCTTG":68887, "GCTCA":50130, "GCTCT":45516, "GCTCC":67885, "GCTCG":48193, "GCTGA":63810, "GCTGT":51866, "GCTGC":71805, "GCTGG":100619, "GCCAA":86956, "GCCAT":56959, "GCCAC":65724, "GCCAG":90306, "GCCTA":38492, "GCCTT":65249, "GCCTC":71677, "GCCTG":74553, "GCCCA":81316, "GCCCT":60255, "GCCCC":64963, "GCCCG":58970, "GCCGA":75375, "GCCGT":55528, "GCCGC":89390, "GCCGG":75186, "GCGAA":56562, "GCGAT":47728, "GCGAC":44425, "GCGAG":52193, "GCGTA":24311, "GCGTT":39265, "GCGTC":38886, "GCGTG":36639, "GCGCA":43925, "GCGCT":44155, "GCGCC":65138, "GCGCG":46248, "GCGGA":62465, "GCGGT":58759, "GCGGC":81546, "GCGGG":66133, "GGAAA":82546, "GGAAT":53777, "GGAAC":60688, "GGAAG":542868, "GGATA":47871, "GGATT":57448, "GGATC":42985, "GGATG":64804, "GGACA":45594, "GGACT":33670, "GGACC":38679, "GGACG":42734, "GGAGA":140666, "GGAGT":38400, "GGAGC":59576, "GGAGG":105117, "GGTAA":28937, "GGTAT":29935, "GGTAC":23170, "GGTAG":51643, "GGTTA":33684, "GGTTT":86130, "GGTTC":60694, "GGTTG":90763, "GGTCA":48400, "GGTCT":55164, "GGTCC":37157, "GGTCG":49161, "GGTGA":69081, "GGTGT":49201, "GGTGC":52766, "GGTGG":100737, "GGCAA":69784, "GGCAT":50608, "GGCAC":42147, "GGCAG":82855, "GGCTA":41328, "GGCTT":81450, "GGCTC":53329, "GGCTG":89055, "GGCCA":66047, "GGCCT":54395, "GGCCC":48733, "GGCCG":65881, "GGCGA":80364, "GGCGT":50659, "GGCGC":62501, "GGCGG":103945, "GGGAA":59663, "GGGAT":51725, "GGGAC":36146, "GGGAG":75764, "GGGTA":31244, "GGGTT":79890, "GGGTC":45320, "GGGTG":66078, "GGGCA":60813, "GGGCT":60550, "GGGCC":45612, "GGGCG":64868, "GGGGA":64526, "GGGGT":66442, "GGGGC":55521, "GGGGG":141378 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1104193, "total_bases": 67355773, "q20_bases": 65405827, "q30_bases": 62519135, "total_cycles": 61, "quality_curves": { "A":[39.3021,39.222,39.1942,39.0747,39.128,39.0174,39.1149,38.9564,39.1366,39.1499,39.1267,39.1183,39.1396,39.1515,39.1503,39.1486,39.1578,39.1273,39.1632,39.125,38.5333,39.1073,39.1439,39.1675,38.5557,39.1078,39.1415,38.4693,39.0047,38.7094,39.1128,39.1417,39.0512,38.7152,38.8631,38.9972,39.0279,38.9794,38.9429,38.817,38.1404,38.5853,38.5686,38.4439,38.2702,38.0307,37.5084,37.2494,37.5856,37.3182,37.0886,36.827,36.6864,36.109,35.9894,35.6219,35.4238,35.0966,34.8456,34.3321,34.0511], 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"GC":[0.565834,0.515067,0.565791,0.566884,0.571135,0.522915,0.527244,0.503731,0.496046,0.506424,0.51302,0.511252,0.517728,0.523372,0.520002,0.524339,0.527666,0.521726,0.522526,0.525508,0.522231,0.526587,0.527236,0.521012,0.524439,0.525562,0.519664,0.526173,0.528952,0.522098,0.523352,0.524896,0.521584,0.522606,0.527303,0.520609,0.521254,0.522995,0.516982,0.521121,0.523082,0.5197,0.519117,0.521228,0.517588,0.520637,0.52285,0.516699,0.521079,0.523409,0.518976,0.519037,0.525032,0.51921,0.519031,0.522824,0.521412,0.518575,0.521867,0.521332,0.522595,0.524767,0.520932,0.524607,0.523217,0.519802,0.524012,0.529854,0.526612,0.526228,0.524453,0.522946,0.531429,0.525831,0.526604,0.52898,0.531091,0.532207,0.530008,0.530953,0.538471,0.540815,0.545134,0.549435,0.563563,0.572346,0.573864,0.57117,0.577291,0.573308,0.525571] }, "kmer_count": { "AAAAA":97006, "AAAAT":60807, "AAAAC":77807, "AAAAG":68930, "AAATA":36504, "AAATT":42092, "AAATC":53779, "AAATG":42037, "AAACA":62604, "AAACT":43632, 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"CTTGA":48761, "CTTGT":48469, "CTTGC":45183, "CTTGG":59137, "CTCAA":48845, "CTCAT":36599, "CTCAC":32496, "CTCAG":37374, "CTCTA":23922, "CTCTT":55125, "CTCTC":43720, "CTCTG":41279, "CTCCA":68930, "CTCCT":95851, "CTCCC":62071, "CTCCG":49610, "CTCGA":40465, "CTCGT":33563, "CTCGC":38869, "CTCGG":41225, "CTGAA":48854, "CTGAT":37250, "CTGAC":29491, "CTGAG":35353, "CTGTA":17474, "CTGTT":54619, "CTGTC":31289, "CTGTG":32284, "CTGCA":45886, "CTGCT":78031, "CTGCC":62947, "CTGCG":40801, "CTGGA":61774, "CTGGT":56747, "CTGGC":57763, "CTGGG":56381, "CCAAA":86542, "CCAAT":41537, "CCAAC":84546, "CCAAG":63676, "CCATA":33241, "CCATT":42495, "CCATC":59515, "CCATG":41382, "CCACA":63825, "CCACT":33301, "CCACC":103865, "CCACG":42051, "CCAGA":57868, "CCAGT":41399, "CCAGC":88532, "CCAGG":55019, "CCTAA":23981, "CCTAT":26532, "CCTAC":29973, "CCTAG":19422, "CCTTA":21833, "CCTTT":60302, "CCTTC":76812, "CCTTG":55386, "CCTCA":56799, "CCTCT":51587, "CCTCC":103876, "CCTCG":51491, "CCTGA":45670, "CCTGT":46144, "CCTGC":83494, "CCTGG":57876, "CCCAA":82413, "CCCAT":44880, "CCCAC":70310, "CCCAG":60587, "CCCTA":27800, "CCCTT":46385, "CCCTC":57737, "CCCTG":50088, "CCCCA":76456, "CCCCT":50607, "CCCCC":53389, "CCCCG":52610, "CCCGA":41749, "CCCGT":30529, "CCCGC":63189, "CCCGG":46739, "CCGAA":47115, "CCGAT":38354, "CCGAC":39942, "CCGAG":41367, "CCGTA":21020, "CCGTT":34483, "CCGTC":41481, "CCGTG":30982, "CCGCA":47956, "CCGCT":47953, "CCGCC":96354, "CCGCG":42995, "CCGGA":43821, "CCGGT":39964, "CCGGC":61162, "CCGGG":43424, "CGAAA":48182, "CGAAT":28912, "CGAAC":36553, "CGAAG":50289, "CGATA":25348, "CGATT":36162, "CGATC":36651, "CGATG":46533, "CGACA":33882, "CGACT":28265, "CGACC":44549, "CGACG":41145, "CGAGA":39254, "CGAGT":22819, "CGAGC":35296, "CGAGG":43921, "CGTAA":20383, "CGTAT":17588, "CGTAC":14487, "CGTAG":21869, "CGTTA":15469, "CGTTT":36156, "CGTTC":34427, "CGTTG":35599, "CGTCA":31696, "CGTCT":33763, "CGTCC":35788, "CGTCG":40211, "CGTGA":26705, "CGTGT":19149, "CGTGC":24867, "CGTGG":36005, "CGCAA":35097, "CGCAT":25766, "CGCAC":28632, "CGCAG":38188, "CGCTA":17661, "CGCTT":42046, "CGCTC":36397, "CGCTG":45285, "CGCCA":62415, "CGCCT":60688, "CGCCC":60826, "CGCCG":71148, "CGCGA":30155, "CGCGT":21702, "CGCGC":37083, "CGCGG":41774, "CGGAA":43494, "CGGAT":33446, "CGGAC":24223, "CGGAG":42823, "CGGTA":21901, "CGGTT":40901, "CGGTC":37122, "CGGTG":46370, "CGGCA":47058, "CGGCT":54540, "CGGCC":53188, "CGGCG":66096, "CGGGA":37377, "CGGGT":35516, "CGGGC":40711, "CGGGG":43570, "GAAAA":86876, "GAAAT":52532, "GAAAC":53890, "GAAAG":56144, "GAATA":32419, "GAATT":40405, "GAATC":39343, "GAATG":33796, "GAACA":48256, "GAACT":38014, "GAACC":52221, "GAACG":32056, "GAAGA":79101, "GAAGT":38303, "GAAGC":68567, "GAAGG":64051, "GATAA":35194, "GATAT":29712, "GATAC":22341, "GATAG":27873, "GATTA":26921, "GATTT":55550, "GATTC":41017, "GATTG":40107, "GATCA":37480, "GATCT":38507, "GATCC":36175, "GATCG":34051, "GATGA":59441, "GATGT":35655, "GATGC":39687, "GATGG":54809, "GACAA":45616, "GACAT":29686, "GACAC":24276, "GACAG":29040, "GACTA":17557, "GACTT":36323, "GACTC":23047, "GACTG":25960, "GACCA":46301, "GACCT":35468, "GACCC":42101, "GACCG":36985, "GACGA":46280, "GACGT":23217, "GACGC":31342, "GACGG":36334, "GAGAA":68917, "GAGAT":43790, "GAGAC":39512, "GAGAG":36945, "GAGTA":16637, "GAGTT":34637, "GAGTC":21977, "GAGTG":19797, "GAGCA":44283, "GAGCT":31758, "GAGCC":41908, "GAGCG":30174, "GAGGA":78722, "GAGGT":41070, "GAGGC":50337, "GAGGG":43307, "GTAAA":22049, "GTAAT":19066, "GTAAC":18123, "GTAAG":15335, "GTATA":12532, "GTATT":24302, "GTATC":20662, "GTATG":20029, "GTACA":16132, "GTACT":14838, "GTACC":18156, "GTACG":14744, "GTAGA":27291, "GTAGT":19061, "GTAGC":23474, "GTAGG":23713, "GTTAA":18129, "GTTAT":23906, "GTTAC":20635, "GTTAG":15791, "GTTTA":24288, "GTTTT":69929, "GTTTC":52161, "GTTTG":58335, "GTTCA":38638, "GTTCT":47004, "GTTCC":53438, "GTTCG":34998, "GTTGA":48739, "GTTGT":51036, "GTTGC":43638, "GTTGG":69425, "GTCAA":36507, "GTCAT":30363, "GTCAC":23489, "GTCAG":26395, "GTCTA":19972, "GTCTT":44626, "GTCTC":41224, "GTCTG":34201, "GTCCA":35913, "GTCCT":36658, "GTCCC":31019, "GTCCG":24479, "GTCGA":33274, "GTCGT":32696, "GTCGC":34078, "GTCGG":34739, "GTGAA":38811, "GTGAT":33414, "GTGAC":21375, "GTGAG":26921, "GTGTA":13443, "GTGTT":37644, "GTGTC":20284, "GTGTG":26523, "GTGCA":23754, "GTGCT":34267, "GTGCC":32134, "GTGCG":24465, "GTGGA":44547, "GTGGT":54145, "GTGGC":45227, "GTGGG":51809, "GCAAA":48269, "GCAAT":33029, "GCAAC":46290, "GCAAG":40817, "GCATA":23312, "GCATT":33032, "GCATC":37594, "GCATG":29050, "GCACA":29116, "GCACT":21557, "GCACC":49351, "GCACG":26270, "GCAGA":46459, "GCAGT":28152, "GCAGC":54452, "GCAGG":66061, "GCTAA":18607, "GCTAT":25932, "GCTAC":25094, "GCTAG":16302, "GCTTA":23040, "GCTTT":55580, "GCTTC":74048, "GCTTG":55837, "GCTCA":37116, "GCTCT":35650, "GCTCC":54850, "GCTCG":37146, "GCTGA":47717, "GCTGT":40243, "GCTGC":56723, "GCTGG":80169, "GCCAA":63811, "GCCAT":44843, "GCCAC":51557, "GCCAG":55077, "GCCTA":27086, "GCCTT":52243, "GCCTC":57850, "GCCTG":58665, "GCCCA":60612, "GCCCT":46889, "GCCCC":51421, "GCCCG":44462, "GCCGA":54767, "GCCGT":42647, "GCCGC":68406, "GCCGG":57124, "GCGAA":40197, "GCGAT":36484, "GCGAC":33972, "GCGAG":32630, "GCGTA":16285, "GCGTT":30555, "GCGTC":29147, "GCGTG":27469, "GCGCA":30826, "GCGCT":33816, "GCGCC":50263, "GCGCG":34237, "GCGGA":43836, "GCGGT":45918, "GCGGC":62478, "GCGGG":50764, "GGAAA":62832, "GGAAT":43634, "GGAAC":47389, "GGAAG":60173, "GGATA":33967, "GGATT":47007, "GGATC":33897, "GGATG":50968, "GGACA":33321, "GGACT":26026, "GGACC":29739, "GGACG":31850, "GGAGA":70811, "GGAGT":29333, "GGAGC":45948, "GGAGG":80851, "GGTAA":20712, "GGTAT":23205, "GGTAC":17483, "GGTAG":28364, "GGTTA":23375, "GGTTT":71437, "GGTTC":48976, "GGTTG":74696, "GGTCA":34954, "GGTCT":44336, "GGTCC":29183, "GGTCG":37784, "GGTGA":49827, "GGTGT":39447, "GGTGC":41992, "GGTGG":80202, "GGCAA":50684, "GGCAT":39286, "GGCAC":32152, "GGCAG":50711, "GGCTA":28404, "GGCTT":65639, "GGCTC":41940, "GGCTG":69914, "GGCCA":46449, "GGCCT":42701, "GGCCC":37231, "GGCCG":49205, "GGCGA":58015, "GGCGT":38709, "GGCGC":46996, "GGCGG":80108, "GGGAA":43573, "GGGAT":40688, "GGGAC":27426, "GGGAG":48050, "GGGTA":20661, "GGGTT":65374, "GGGTC":36278, "GGGTG":50384, "GGGCA":43352, "GGGCT":47918, "GGGCC":34443, "GGGCG":49296, "GGGGA":45814, "GGGGT":49910, "GGGGC":43175, "GGGGG":37754 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-12A_S80_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-12A_S80_R2_001.fastq.gz -o AM-AL-12A.trim.R1.fastq.gz -O AM-AL-12A.trim.R2.fastq.gz -m --merged_out AM-AL-12A.trim.merged.fastq.gz " }