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"GAGTT":39381, "GAGTC":24189, "GAGTG":23631, "GAGCA":389970, "GAGCT":37097, "GAGCC":46273, "GAGCG":36413, "GAGGA":90987, "GAGGT":46993, "GAGGC":57132, "GAGGG":48099, "GTAAA":25962, "GTAAT":21650, "GTAAC":21674, "GTAAG":22229, "GTATA":15522, "GTATT":27875, "GTATC":23926, "GTATG":22911, "GTACA":19208, "GTACT":17440, "GTACC":20290, "GTACG":17146, "GTAGA":68105, "GTAGT":21880, "GTAGC":26899, "GTAGG":26607, "GTTAA":22133, "GTTAT":26477, "GTTAC":21963, "GTTAG":27709, "GTTTA":29952, "GTTTT":74528, "GTTTC":56036, "GTTTG":60331, "GTTCA":43895, "GTTCT":50178, "GTTCC":53989, "GTTCG":38195, "GTTGA":56730, "GTTGT":53298, "GTTGC":46473, "GTTGG":69885, "GTCAA":42776, "GTCAT":33324, "GTCAC":81173, "GTCAG":38849, "GTCTA":24877, "GTCTT":47764, "GTCTC":57461, "GTCTG":242090, "GTCCA":42118, "GTCCT":37151, "GTCCC":31778, "GTCCG":27201, "GTCGA":40088, "GTCGT":35591, "GTCGC":36843, "GTCGG":39122, "GTGAA":48321, "GTGAT":38925, "GTGAC":25275, "GTGAG":36092, "GTGTA":17485, "GTGTT":39972, "GTGTC":22374, 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"GCGCT":37614, "GCGCC":54593, "GCGCG":40292, "GCGGA":52678, "GCGGT":48177, "GCGGC":68554, "GCGGG":54379, "GGAAA":75159, "GGAAT":48481, "GGAAC":53050, "GGAAG":478946, "GGATA":42908, "GGATT":51451, "GGATC":37580, "GGATG":55981, "GGACA":41488, "GGACT":29251, "GGACC":33262, "GGACG":37236, "GGAGA":122477, "GGAGT":34093, "GGAGC":51143, "GGAGG":88326, "GGTAA":26739, "GGTAT":27606, "GGTAC":19922, "GGTAG":44708, "GGTTA":29969, "GGTTT":72653, "GGTTC":51402, "GGTTG":74827, "GGTCA":41469, "GGTCT":45538, "GGTCC":31100, "GGTCG":40481, "GGTGA":60437, "GGTGT":40912, "GGTGC":44088, "GGTGG":80690, "GGCAA":61743, "GGCAT":44622, "GGCAC":36505, "GGCAG":73811, "GGCTA":35374, "GGCTT":68124, "GGCTC":44701, "GGCTG":74029, "GGCCA":57538, "GGCCT":44643, "GGCCC":40368, "GGCCG":55388, "GGCGA":68752, "GGCGT":42266, "GGCGC":53400, "GGCGG":83601, "GGGAA":53024, "GGGAT":45287, "GGGAC":32032, "GGGAG":67094, "GGGTA":27186, "GGGTT":64308, "GGGTC":36619, "GGGTG":53798, "GGGCA":54449, "GGGCT":49813, "GGGCC":38108, "GGGCG":52710, "GGGGA":56254, "GGGGT":51284, "GGGGC":45564, "GGGGG":112324 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 960151, "total_bases": 58569211, "q20_bases": 57034390, "q30_bases": 54529224, "total_cycles": 61, "quality_curves": { "A":[39.471,39.1974,39.1859,38.9758,38.9447,39.1913,39.1449,38.9624,39.1562,39.1511,39.1877,39.1823,39.1955,39.1912,39.1623,39.1477,39.191,39.1841,39.1864,39.1528,38.6246,39.1084,39.1457,39.185,38.7389,39.1466,39.18,38.5895,39.0502,38.8145,39.1341,39.1523,39.0743,39.1131,39.0867,39.0573,39.0609,38.9385,38.9657,38.9152,38.7441,38.6387,38.6243,38.537,38.3747,38.0971,37.736,37.5071,37.7055,37.4521,37.2186,37.0184,36.8205,36.4194,36.2765,36.0157,35.8043,35.5238,35.4431,34.8714,34.7462], 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"GC":[0.542276,0.496279,0.554264,0.554897,0.557592,0.514306,0.518067,0.496082,0.489626,0.49898,0.504844,0.504486,0.509993,0.513513,0.513864,0.516279,0.516193,0.512851,0.515528,0.514592,0.513385,0.51528,0.514943,0.512503,0.513927,0.515745,0.513304,0.512502,0.515125,0.512633,0.512582,0.513403,0.510997,0.511906,0.513446,0.511989,0.510521,0.51257,0.508374,0.511211,0.513387,0.512502,0.512132,0.510908,0.510377,0.5088,0.514221,0.511647,0.510346,0.512075,0.51324,0.510924,0.514918,0.512634,0.509238,0.509718,0.513066,0.510335,0.516529,0.515431,0.513797,0.516196,0.517217,0.519253,0.517513,0.520862,0.517807,0.524881,0.521086,0.521349,0.516054,0.520879,0.525569,0.524107,0.529501,0.524177,0.529274,0.529656,0.52739,0.533183,0.531282,0.547542,0.54482,0.556921,0.559815,0.562697,0.572124,0.586629,0.586385,0.591237,0.567568] }, "kmer_count": { "AAAAA":86529, "AAAAT":53892, "AAAAC":65253, "AAAAG":59206, "AAATA":32220, "AAATT":37568, "AAATC":45514, "AAATG":36378, "AAACA":53020, "AAACT":36397, 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"CCTGC":60133, "CCTGG":43707, "CCCAA":65375, "CCCAT":36008, "CCCAC":53121, "CCCAG":46683, "CCCTA":20811, "CCCTT":36218, "CCCTC":42661, "CCCTG":37092, "CCCCA":57929, "CCCCT":37347, "CCCCC":39570, "CCCCG":38368, "CCCGA":32460, "CCCGT":22877, "CCCGC":45324, "CCCGG":34700, "CCGAA":37842, "CCGAT":30860, "CCGAC":31817, "CCGAG":31849, "CCGTA":17414, "CCGTT":26624, "CCGTC":31750, "CCGTG":25049, "CCGCA":36426, "CCGCT":35064, "CCGCC":70090, "CCGCG":32670, "CCGGA":34132, "CCGGT":30726, "CCGGC":44893, "CCGGG":33128, "CGAAA":40007, "CGAAT":24163, "CGAAC":28948, "CGAAG":39710, "CGATA":20703, "CGATT":29486, "CGATC":29498, "CGATG":37501, "CGACA":26662, "CGACT":22687, "CGACC":34672, "CGACG":31601, "CGAGA":30619, "CGAGT":18296, "CGAGC":27850, "CGAGG":34427, "CGTAA":16648, "CGTAT":14574, "CGTAC":11634, "CGTAG":17534, "CGTTA":12560, "CGTTT":29922, "CGTTC":26015, "CGTTG":28949, "CGTCA":25272, "CGTCT":26516, "CGTCC":27008, "CGTCG":30595, "CGTGA":22016, "CGTGT":15384, "CGTGC":19571, "CGTGG":28056, "CGCAA":28383, "CGCAT":20712, "CGCAC":21766, "CGCAG":29214, "CGCTA":13694, "CGCTT":32557, "CGCTC":27604, "CGCTG":34635, "CGCCA":47076, "CGCCT":45841, "CGCCC":44606, "CGCCG":52945, "CGCGA":24025, "CGCGT":17093, "CGCGC":28365, "CGCGG":31418, "CGGAA":36099, "CGGAT":26730, "CGGAC":19391, "CGGAG":33588, "CGGTA":17535, "CGGTT":32766, "CGGTC":28311, "CGGTG":35608, "CGGCA":36308, "CGGCT":41000, "CGGCC":38749, "CGGCG":49981, "CGGGA":29111, "CGGGT":26912, "CGGGC":31001, "CGGGG":32815, "GAAAA":76252, "GAAAT":45099, "GAAAC":44715, "GAAAG":47096, "GAATA":27905, "GAATT":34574, "GAATC":31954, "GAATG":28170, "GAACA":40061, "GAACT":31500, "GAACC":41647, "GAACG":25425, "GAAGA":64119, "GAAGT":31121, "GAAGC":53865, "GAAGG":50989, "GATAA":30055, "GATAT":25220, "GATAC":18250, "GATAG":23091, "GATTA":23222, "GATTT":46720, "GATTC":33248, "GATTG":33328, "GATCA":30763, "GATCT":30534, "GATCC":28713, "GATCG":26922, "GATGA":48787, "GATGT":29146, "GATGC":31468, "GATGG":43352, "GACAA":37538, "GACAT":24412, "GACAC":19575, "GACAG":23397, "GACTA":13848, "GACTT":29856, "GACTC":18617, "GACTG":21225, "GACCA":37467, "GACCT":27551, "GACCC":31812, "GACCG":28742, "GACGA":36348, "GACGT":18561, "GACGC":24333, "GACGG":28490, "GAGAA":56944, "GAGAT":35860, "GAGAC":30963, "GAGAG":30167, "GAGTA":14000, "GAGTT":28681, "GAGTC":17214, "GAGTG":16563, "GAGCA":35262, "GAGCT":25033, "GAGCC":32375, "GAGCG":24256, "GAGGA":63439, "GAGGT":31992, "GAGGC":39478, "GAGGG":33557, "GTAAA":18700, "GTAAT":15791, "GTAAC":15073, "GTAAG":12695, "GTATA":10412, "GTATT":21068, "GTATC":17414, "GTATG":16963, "GTACA":12620, "GTACT":12160, "GTACC":14158, "GTACG":11796, "GTAGA":22470, "GTAGT":15513, "GTAGC":18810, "GTAGG":19014, "GTTAA":16216, "GTTAT":20122, "GTTAC":16188, "GTTAG":13052, "GTTTA":20250, "GTTTT":59455, "GTTTC":42583, "GTTTG":46910, "GTTCA":30700, "GTTCT":37981, "GTTCC":40209, "GTTCG":27635, "GTTGA":40624, "GTTGT":41136, "GTTGC":34690, "GTTGG":54088, "GTCAA":28796, "GTCAT":24120, "GTCAC":18836, "GTCAG":21190, "GTCTA":15887, "GTCTT":35903, "GTCTC":31341, "GTCTG":26672, "GTCCA":28770, "GTCCT":27070, "GTCCC":23019, "GTCCG":18813, "GTCGA":26519, "GTCGT":24917, "GTCGC":25648, "GTCGG":26782, "GTGAA":31950, "GTGAT":27182, "GTGAC":17644, "GTGAG":21751, "GTGTA":11132, "GTGTT":30389, "GTGTC":15934, "GTGTG":21261, "GTGCA":19206, "GTGCT":26057, "GTGCC":25400, "GTGCG":18672, "GTGGA":36009, "GTGGT":40916, "GTGGC":34667, "GTGGG":39158, "GCAAA":40564, "GCAAT":27890, "GCAAC":37058, "GCAAG":32663, "GCATA":19020, "GCATT":27330, "GCATC":30071, "GCATG":23637, "GCACA":23155, "GCACT":16947, "GCACC":37350, "GCACG":20618, "GCAGA":37404, "GCAGT":22469, "GCAGC":43536, "GCAGG":52076, "GCTAA":15499, "GCTAT":21371, "GCTAC":19523, "GCTAG":12429, "GCTTA":19492, "GCTTT":45466, "GCTTC":56549, "GCTTG":43070, "GCTCA":29630, "GCTCT":28202, "GCTCC":39842, "GCTCG":27398, "GCTGA":37244, "GCTGT":31240, "GCTGC":43879, "GCTGG":60624, "GCCAA":50773, "GCCAT":35711, "GCCAC":39273, "GCCAG":42657, "GCCTA":21571, "GCCTT":41010, "GCCTC":42862, "GCCTG":43769, "GCCCA":46690, "GCCCT":34633, "GCCCC":37383, "GCCCG":33130, "GCCGA":43359, "GCCGT":33079, "GCCGC":50532, "GCCGG":42955, "GCGAA":32149, "GCGAT":29335, "GCGAC":26960, "GCGAG":25750, "GCGTA":13054, "GCGTT":24491, "GCGTC":22511, "GCGTG":21048, "GCGCA":24522, "GCGCT":25700, "GCGCC":37968, "GCGCG":26688, "GCGGA":34593, "GCGGT":34763, "GCGGC":47161, "GCGGG":37658, "GGAAA":54211, "GGAAT":36422, "GGAAC":39113, "GGAAG":48026, "GGATA":28164, "GGATT":39169, "GGATC":27226, "GGATG":40093, "GGACA":27456, "GGACT":20619, "GGACC":23434, "GGACG":25003, "GGAGA":57331, "GGAGT":24117, "GGAGC":35898, "GGAGG":62314, "GGTAA":17379, "GGTAT":19970, "GGTAC":13820, "GGTAG":22456, "GGTTA":19504, "GGTTT":57163, "GGTTC":38404, "GGTTG":57935, "GGTCA":26809, "GGTCT":33511, "GGTCC":22231, "GGTCG":27941, "GGTGA":39440, "GGTGT":30639, "GGTGC":31574, "GGTGG":60151, "GGCAA":41170, "GGCAT":31395, "GGCAC":25150, "GGCAG":40595, "GGCTA":22499, "GGCTT":51111, "GGCTC":32091, "GGCTG":53429, "GGCCA":35796, "GGCCT":31255, "GGCCC":27658, "GGCCG":36994, "GGCGA":45611, "GGCGT":29043, "GGCGC":35605, "GGCGG":58438, "GGGAA":35708, "GGGAT":32565, "GGGAC":21998, "GGGAG":38503, "GGGTA":16640, "GGGTT":49684, "GGGTC":26831, "GGGTG":38219, "GGGCA":34835, "GGGCT":36260, "GGGCC":25938, "GGGCG":35737, "GGGGA":36558, "GGGGT":37234, "GGGGC":32175, "GGGGG":29285 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-11C_S79_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-11C_S79_R2_001.fastq.gz -o AM-AL-11C.trim.R1.fastq.gz -O AM-AL-11C.trim.R2.fastq.gz -m --merged_out AM-AL-11C.trim.merged.fastq.gz " }