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"GGGCC":45460, "GGGCG":64129, "GGGGA":58302, "GGGGT":52408, "GGGGC":50851, "GGGGG":186660 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1195936, "total_bases": 72952096, "q20_bases": 70317883, "q30_bases": 66839147, "total_cycles": 61, "quality_curves": { "A":[39.1664,39.0638,39.0454,39.0136,38.9111,38.9598,39.0729,38.9517,39.0896,39.0904,39.1233,39.1311,39.1458,39.1236,39.1148,39.0894,39.1482,39.1384,39.1535,39.1203,38.2769,39.0591,39.1242,39.128,38.3566,39.0271,39.1077,38.3081,38.8681,38.6693,39.0961,39.1232,39.0568,39.0995,39.0516,38.2012,38.8023,38.4826,38.7561,38.0306,38.1541,37.8314,38.2957,38.1195,37.8593,37.4828,36.8757,36.4983,36.8295,36.4592,36.163,35.7898,35.5185,34.9545,34.7109,34.2645,33.9283,33.5414,33.1841,32.4927,31.9134], 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"N":[3.78239e-06,2.77375e-05,2.52159e-06,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.81274e-06,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], "GC":[0.541374,0.498493,0.555984,0.553596,0.559038,0.515001,0.51664,0.497221,0.48909,0.495464,0.502102,0.501696,0.505124,0.510727,0.509786,0.510708,0.513764,0.5098,0.510016,0.511773,0.510912,0.511394,0.510664,0.506585,0.508925,0.512402,0.509018,0.511933,0.514822,0.512138,0.512691,0.51473,0.510906,0.511387,0.513718,0.513135,0.510702,0.512148,0.511078,0.511183,0.51161,0.511679,0.508906,0.513049,0.511178,0.511013,0.513854,0.51205,0.511512,0.514021,0.511947,0.512187,0.511722,0.511604,0.512335,0.514436,0.514362,0.512347,0.518341,0.515558,0.515066,0.513391,0.519569,0.515154,0.516398,0.520807,0.519387,0.521439,0.524422,0.521898,0.521257,0.526321,0.5256,0.528497,0.524999,0.526094,0.528737,0.5278,0.532689,0.537215,0.53539,0.538265,0.539006,0.551583,0.555899,0.559166,0.578876,0.580418,0.581718,0.593107,0.551695] }, "kmer_count": { "AAAAA":94455, "AAAAT":64894, "AAAAC":70025, "AAAAG":67111, "AAATA":39340, "AAATT":46115, "AAATC":54758, "AAATG":42267, "AAACA":54465, "AAACT":43830, "AAACC":68126, 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"CTTGT":43566, "CTTGC":44768, "CTTGG":53812, "CTCAA":46661, "CTCAT":35330, "CTCAC":29259, "CTCAG":33606, "CTCTA":22907, "CTCTT":55156, "CTCTC":39021, "CTCTG":37791, "CTCCA":58639, "CTCCT":73817, "CTCCC":47194, "CTCCG":42649, "CTCGA":40524, "CTCGT":32241, "CTCGC":37651, "CTCGG":38758, "CTGAA":48110, "CTGAT":38095, "CTGAC":29599, "CTGAG":31929, "CTGTA":17733, "CTGTT":47848, "CTGTC":29318, "CTGTG":28308, "CTGCA":42856, "CTGCT":65876, "CTGCC":55325, "CTGCG":38390, "CTGGA":56188, "CTGGT":50165, "CTGGC":54214, "CTGGG":46618, "CCAAA":70688, "CCAAT":40633, "CCAAC":65465, "CCAAG":53547, "CCATA":31787, "CCATT":42469, "CCATC":55477, "CCATG":39974, "CCACA":49516, "CCACT":30111, "CCACC":77402, "CCACG":37751, "CCAGA":52249, "CCAGT":38475, "CCAGC":72946, "CCAGG":48303, "CCTAA":21233, "CCTAT":25430, "CCTAC":25120, "CCTAG":15882, "CCTTA":21812, "CCTTT":57419, "CCTTC":68205, "CCTTG":50369, "CCTCA":48174, "CCTCT":46081, "CCTCC":76564, "CCTCG":46588, "CCTGA":41933, "CCTGT":37667, "CCTGC":66193, "CCTGG":50512, "CCCAA":60861, "CCCAT":39877, "CCCAC":50880, "CCCAG":49940, "CCCTA":21382, "CCCTT":40764, "CCCTC":45844, "CCCTG":41131, "CCCCA":54570, "CCCCT":38584, "CCCCC":38497, "CCCCG":41588, "CCCGA":37443, "CCCGT":27115, "CCCGC":52147, "CCCGG":41017, "CCGAA":44273, "CCGAT":38700, "CCGAC":38737, "CCGAG":38552, "CCGTA":20035, "CCGTT":33502, "CCGTC":39309, "CCGTG":29406, "CCGCA":43057, "CCGCT":44092, "CCGCC":82935, "CCGCG":41613, "CCGGA":39528, "CCGGT":37698, "CCGGC":58044, "CCGGG":38608, "CGAAA":47681, "CGAAT":30741, "CGAAC":34588, "CGAAG":47821, "CGATA":25626, "CGATT":37967, "CGATC":39398, "CGATG":47498, "CGACA":32937, "CGACT":27932, "CGACC":40970, "CGACG":42096, "CGAGA":37997, "CGAGT":23161, "CGAGC":35370, "CGAGG":40187, "CGTAA":18946, "CGTAT":17742, "CGTAC":13669, "CGTAG":20490, "CGTTA":16127, "CGTTT":37387, "CGTTC":33626, "CGTTG":35311, "CGTCA":32618, "CGTCT":33087, "CGTCC":32397, "CGTCG":40102, "CGTGA":26369, "CGTGT":18474, "CGTGC":24854, "CGTGG":33206, "CGCAA":34153, "CGCAT":27389, "CGCAC":26584, "CGCAG":36014, "CGCTA":17353, "CGCTT":41655, "CGCTC":35748, "CGCTG":44703, "CGCCA":58066, "CGCCT":54674, "CGCCC":52688, "CGCCG":71646, "CGCGA":31546, "CGCGT":22566, "CGCGC":39700, "CGCGG":39615, "CGGAA":41724, "CGGAT":33135, "CGGAC":23732, "CGGAG":36520, "CGGTA":20811, "CGGTT":38701, "CGGTC":35378, "CGGTG":42808, "CGGCA":47144, "CGGCT":49861, "CGGCC":50520, "CGGCG":66450, "CGGGA":33446, "CGGGT":30920, "CGGGC":38454, "CGGGG":36002, "GAAAA":86874, "GAAAT":54138, "GAAAC":50505, "GAAAG":54029, "GAATA":32762, "GAATT":42976, "GAATC":38989, "GAATG":33991, "GAACA":43933, "GAACT":37735, "GAACC":44805, "GAACG":31134, "GAAGA":75005, "GAAGT":38559, "GAAGC":60403, "GAAGG":55772, "GATAA":34225, "GATAT":31053, "GATAC":22141, "GATAG":26428, "GATTA":27107, "GATTT":58155, "GATTC":40821, "GATTG":39808, "GATCA":37857, "GATCT":37783, "GATCC":35138, "GATCG":36352, "GATGA":56841, "GATGT":35692, "GATGC":40316, "GATGG":50428, "GACAA":42578, "GACAT":30594, "GACAC":21999, "GACAG":27617, "GACTA":17018, "GACTT":35837, "GACTC":21877, "GACTG":25603, "GACCA":41446, "GACCT":33308, "GACCC":33212, "GACCG":34572, "GACGA":44658, "GACGT":23607, "GACGC":31579, "GACGG":35498, "GAGAA":60232, "GAGAT":41423, "GAGAC":32873, "GAGAG":32807, "GAGTA":16742, "GAGTT":34449, "GAGTC":20009, "GAGTG":19172, "GAGCA":40254, "GAGCT":30605, "GAGCC":36267, "GAGCG":30307, "GAGGA":62480, "GAGGT":35610, "GAGGC":43647, "GAGGG":34376, "GTAAA":23576, "GTAAT":19437, "GTAAC":16600, "GTAAG":15172, "GTATA":13153, "GTATT":25393, "GTATC":20705, "GTATG":19906, "GTACA":15173, "GTACT":14735, "GTACC":15930, "GTACG":13859, "GTAGA":24780, "GTAGT":17840, "GTAGC":21715, "GTAGG":20439, "GTTAA":19826, "GTTAT":24322, "GTTAC":18734, "GTTAG":14901, "GTTTA":24473, "GTTTT":68357, "GTTTC":51639, "GTTTG":51314, "GTTCA":38473, "GTTCT":44464, "GTTCC":46081, "GTTCG":33572, "GTTGA":47561, "GTTGT":43020, "GTTGC":41316, "GTTGG":55921, "GTCAA":37283, "GTCAT":30515, "GTCAC":23807, "GTCAG":26054, "GTCTA":18982, "GTCTT":44005, "GTCTC":34896, "GTCTG":31891, "GTCCA":33858, "GTCCT":31431, "GTCCC":26552, "GTCCG":23773, "GTCGA":34598, "GTCGT":29564, "GTCGC":33991, "GTCGG":33906, "GTGAA":37038, "GTGAT":31922, "GTGAC":22208, "GTGAG":23204, "GTGTA":13026, "GTGTT":31951, "GTGTC":19607, "GTGTG":21963, "GTGCA":22787, "GTGCT":31023, "GTGCC":30227, "GTGCG":22833, "GTGGA":40099, "GTGGT":43394, "GTGGC":40869, "GTGGG":39314, "GCAAA":48296, "GCAAT":34761, "GCAAC":41580, "GCAAG":39641, "GCATA":23627, "GCATT":34019, "GCATC":38983, "GCATG":29191, "GCACA":26916, "GCACT":21484, "GCACC":41185, "GCACG":25844, "GCAGA":44512, "GCAGT":27619, "GCAGC":50250, "GCAGG":54414, "GCTAA":18924, "GCTAT":25301, "GCTAC":23104, "GCTAG":14124, "GCTTA":22806, "GCTTT":56124, "GCTTC":67763, "GCTTG":50871, "GCTCA":35773, "GCTCT":34949, "GCTCC":44972, "GCTCG":35976, "GCTGA":46735, "GCTGT":35786, "GCTGC":52856, "GCTGG":67937, "GCCAA":57294, "GCCAT":44862, "GCCAC":44759, "GCCAG":51567, "GCCTA":24879, "GCCTT":51069, "GCCTC":49744, "GCCTG":50996, "GCCCA":50477, "GCCCT":39866, "GCCCC":40652, "GCCCG":41503, "GCCGA":54804, "GCCGT":41341, "GCCGC":65010, "GCCGG":55129, "GCGAA":39958, "GCGAT":38096, "GCGAC":34016, "GCGAG":31988, "GCGTA":16026, "GCGTT":31071, "GCGTC":29667, "GCGTG":26218, "GCGCA":31634, "GCGCT":34579, "GCGCC":49504, "GCGCG":37195, "GCGGA":40099, "GCGGT":41385, "GCGGC":60225, "GCGGG":42990, "GGAAA":62627, "GGAAT":42498, "GGAAC":41347, "GGAAG":54043, "GGATA":31131, "GGATT":45461, "GGATC":32418, "GGATG":45257, "GGACA":30219, "GGACT":23188, "GGACC":25967, "GGACG":29088, "GGAGA":56233, "GGAGT":26425, "GGAGC":38701, "GGAGG":59466, "GGTAA":20932, "GGTAT":23032, "GGTAC":16035, "GGTAG":23708, "GGTTA":22189, "GGTTT":61459, "GGTTC":42766, "GGTTG":58746, "GGTCA":33293, "GGTCT":37518, "GGTCC":25781, "GGTCG":35101, "GGTGA":44166, "GGTGT":31992, "GGTGC":36519, "GGTGG":63150, "GGCAA":49706, "GGCAT":39166, "GGCAC":30161, "GGCAG":46393, "GGCTA":26536, "GGCTT":59194, "GGCTC":37629, "GGCTG":59211, "GGCCA":43016, "GGCCT":38370, "GGCCC":32153, "GGCCG":46864, "GGCGA":56418, "GGCGT":37324, "GGCGC":46191, "GGCGG":69241, "GGGAA":40454, "GGGAT":35694, "GGGAC":23683, "GGGAG":36876, "GGGTA":18380, "GGGTT":49752, "GGGTC":29001, "GGGTG":39219, "GGGCA":39256, "GGGCT":39768, "GGGCC":30384, "GGGCG":42513, "GGGGA":36251, "GGGGT":37197, "GGGGC":34682, "GGGGG":29153 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-11B_S78_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-11B_S78_R2_001.fastq.gz -o AM-AL-11B.trim.R1.fastq.gz -O AM-AL-11B.trim.R2.fastq.gz -m --merged_out AM-AL-11B.trim.merged.fastq.gz " }