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"CTCGC":53500, "CTCGG":57770, "CTGAA":361976, "CTGAT":47109, "CTGAC":40190, "CTGAG":55314, "CTGTA":25931, "CTGTT":72383, "CTGTC":41864, "CTGTG":43999, "CTGCA":65756, "CTGCT":113317, "CTGCC":90000, "CTGCG":55915, "CTGGA":84255, "CTGGT":79783, "CTGGC":80097, "CTGGG":88753, "CCAAA":112348, "CCAAT":53071, "CCAAC":119184, "CCAAG":102227, "CCATA":45933, "CCATT":52071, "CCATC":80231, "CCATG":55432, "CCACA":91675, "CCACT":44156, "CCACC":157997, "CCACG":58868, "CCAGA":151170, "CCAGT":191111, "CCAGC":126062, "CCAGG":79457, "CCTAA":31787, "CCTAT":33136, "CCTAC":41280, "CCTAG":41867, "CCTTA":32298, "CCTTT":75700, "CCTTC":102634, "CCTTG":73668, "CCTCA":79038, "CCTCT":72837, "CCTCC":202673, "CCTCG":71337, "CCTGA":90598, "CCTGT":64023, "CCTGC":123468, "CCTGG":81606, "CCCAA":116754, "CCCAT":59738, "CCCAC":103348, "CCCAG":107840, "CCCTA":41295, "CCCTT":62211, "CCCTC":84662, "CCCTG":70782, "CCCCA":117765, "CCCCT":73818, "CCCCC":85300, "CCCCG":76032, "CCCGA":62472, "CCCGT":46168, "CCCGC":92270, 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"CGGAT":44600, "CGGAC":33799, "CGGAG":73004, "CGGTA":34779, "CGGTT":53844, "CGGTC":51796, "CGGTG":66496, "CGGCA":72945, "CGGCT":74499, "CGGCC":77490, "CGGCG":95286, "CGGGA":55828, "CGGGT":50051, "CGGGC":60013, "CGGGG":65264, "GAAAA":105643, "GAAAT":79148, "GAAAC":64658, "GAAAG":78356, "GAATA":40342, "GAATT":47520, "GAATC":47244, "GAATG":40809, "GAACA":68579, "GAACT":278865, "GAACC":67991, "GAACG":43450, "GAAGA":732988, "GAAGT":47576, "GAAGC":86814, "GAAGG":81784, "GATAA":44143, "GATAT":36518, "GATAC":29479, "GATAG":52714, "GATTA":34290, "GATTT":65127, "GATTC":51080, "GATTG":50814, "GATCA":57882, "GATCT":52020, "GATCC":54864, "GATCG":722857, "GATGA":79128, "GATGT":45852, "GATGC":51420, "GATGG":71690, "GACAA":57886, "GACAT":37484, "GACAC":32705, "GACAG":51432, "GACTA":24601, "GACTT":45216, "GACTC":30281, "GACTG":36265, "GACCA":66996, "GACCT":47273, "GACCC":57281, "GACCG":51584, "GACGA":62373, "GACGT":30462, "GACGC":41992, "GACGG":48293, "GAGAA":87738, "GAGAT":215505, "GAGAC":50379, "GAGAG":60408, "GAGTA":24155, "GAGTT":42974, "GAGTC":27700, "GAGTG":26868, "GAGCA":579086, "GAGCT":41577, "GAGCC":57774, "GAGCG":42484, "GAGGA":111067, "GAGGT":54404, "GAGGC":68377, "GAGGG":59341, "GTAAA":27096, "GTAAT":23146, "GTAAC":23943, "GTAAG":24493, "GTATA":16251, "GTATT":29732, "GTATC":26235, "GTATG":25789, "GTACA":21686, "GTACT":20235, "GTACC":24640, "GTACG":18983, "GTAGA":89908, "GTAGT":24786, "GTAGC":30987, "GTAGG":30574, "GTTAA":21654, "GTTAT":28423, "GTTAC":26292, "GTTAG":33388, "GTTTA":31930, "GTTTT":82859, "GTTTC":65347, "GTTTG":74139, "GTTCA":49218, "GTTCT":58423, "GTTCC":71929, "GTTCG":46013, "GTTGA":63035, "GTTGT":66494, "GTTGC":59641, "GTTGG":97441, "GTCAA":47378, "GTCAT":37707, "GTCAC":120750, "GTCAG":47360, "GTCTA":29093, "GTCTT":56710, "GTCTC":55366, "GTCTG":364521, "GTCCA":50077, "GTCCT":49179, "GTCCC":42814, "GTCCG":36782, "GTCGA":48462, "GTCGT":43607, "GTCGC":45788, "GTCGG":49132, "GTGAA":54078, "GTGAT":44869, "GTGAC":29473, "GTGAG":45175, "GTGTA":19319, "GTGTT":49718, "GTGTC":26753, "GTGTG":38048, "GTGCA":34148, "GTGCT":47781, "GTGCC":45954, "GTGCG":34144, "GTGGA":63470, "GTGGT":78500, "GTGGC":63030, "GTGGG":75744, "GCAAA":65230, "GCAAT":40990, "GCAAC":60290, "GCAAG":65983, "GCATA":32163, "GCATT":41350, "GCATC":49651, "GCATG":38283, "GCACA":511801, "GCACT":27797, "GCACC":73021, "GCACG":37194, "GCAGA":126398, "GCAGT":36557, "GCAGC":75421, "GCAGG":94621, "GCTAA":25301, "GCTAT":32351, "GCTAC":33080, "GCTAG":35974, "GCTTA":32044, "GCTTT":68106, "GCTTC":97942, "GCTTG":72155, "GCTCA":50587, "GCTCT":47242, "GCTCC":77504, "GCTCG":52466, "GCTGA":63791, "GCTGT":54682, "GCTGC":82288, "GCTGG":112321, "GCCAA":89167, "GCCAT":57847, "GCCAC":72978, "GCCAG":101742, "GCCTA":38947, "GCCTT":68741, "GCCTC":80840, "GCCTG":85187, "GCCCA":88360, "GCCCT":64258, "GCCCC":75556, "GCCCG":65924, "GCCGA":80635, "GCCGT":58777, "GCCGC":100407, "GCCGG":83795, "GCGAA":54840, "GCGAT":48774, "GCGAC":46644, "GCGAG":55856, "GCGTA":24195, "GCGTT":40001, "GCGTC":38864, "GCGTG":38567, "GCGCA":48017, "GCGCT":46156, "GCGCC":70327, "GCGCG":48713, "GCGGA":63759, "GCGGT":63919, "GCGGC":89217, "GCGGG":74460, "GGAAA":85230, "GGAAT":52522, "GGAAC":61656, "GGAAG":686372, "GGATA":48463, "GGATT":59192, "GGATC":45462, "GGATG":66796, "GGACA":47227, "GGACT":33666, "GGACC":40165, "GGACG":44487, "GGAGA":157924, "GGAGT":38462, "GGAGC":61890, "GGAGG":112801, "GGTAA":29578, "GGTAT":31170, "GGTAC":23552, "GGTAG":57820, "GGTTA":33815, "GGTTT":89650, "GGTTC":62308, "GGTTG":104798, "GGTCA":50881, "GGTCT":60058, "GGTCC":39794, "GGTCG":52180, "GGTGA":74118, "GGTGT":56067, "GGTGC":60065, "GGTGG":119049, "GGCAA":69808, "GGCAT":51787, "GGCAC":44653, "GGCAG":93931, "GGCTA":41771, "GGCTT":84060, "GGCTC":56805, "GGCTG":97703, "GGCCA":72267, "GGCCT":59341, "GGCCC":53127, "GGCCG":72975, "GGCGA":84630, "GGCGT":52373, "GGCGC":66171, "GGCGG":115414, "GGGAA":60585, "GGGAT":53068, "GGGAC":38156, "GGGAG":84014, "GGGTA":33201, "GGGTT":88024, "GGGTC":49935, "GGGTG":76412, "GGGCA":66316, "GGGCT":64472, "GGGCC":50615, "GGGCG":71343, "GGGGA":69096, "GGGGT":74862, "GGGGC":61889, "GGGGG":161317 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1201387, "total_bases": 73284607, "q20_bases": 70906666, "q30_bases": 67519601, "total_cycles": 61, "quality_curves": { "A":[39.3958,39.1952,39.1352,39.0659,39.0997,39.1647,39.1206,38.8956,39.1511,39.1403,39.1503,39.1113,39.1494,39.1393,39.1275,39.1035,39.1413,39.1395,39.1504,39.1182,38.4942,39.0871,39.1282,39.1547,38.5517,39.0979,39.1405,38.4503,38.9878,38.7107,39.0992,39.1263,39.0503,39.108,38.9122,39.0049,38.5144,38.405,38.8353,38.4122,38.5914,38.0517,38.4566,38.3058,38.0843,37.7756,37.2507,36.965,37.1703,36.8086,36.4538,36.1099,35.8527,35.329,35.0634,34.6363,34.3166,33.8923,33.5259,32.9394,32.42], 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"CTTGT":50171, "CTTGC":46070, "CTTGG":63631, "CTCAA":46953, "CTCAT":35926, "CTCAC":34630, "CTCAG":37993, "CTCTA":24189, "CTCTT":56720, "CTCTC":47829, "CTCTG":44685, "CTCCA":75090, "CTCCT":116440, "CTCCC":71427, "CTCCG":56200, "CTCGA":41441, "CTCGT":35637, "CTCGC":41071, "CTCGG":44389, "CTGAA":44427, "CTGAT":36571, "CTGAC":30403, "CTGAG":34087, "CTGTA":16902, "CTGTT":58748, "CTGTC":32550, "CTGTG":34218, "CTGCA":47303, "CTGCT":92791, "CTGCC":71109, "CTGCG":42789, "CTGGA":61201, "CTGGT":63960, "CTGGC":60938, "CTGGG":60427, "CCAAA":88132, "CCAAT":42542, "CCAAC":98338, "CCAAG":63095, "CCATA":32359, "CCATT":41824, "CCATC":62528, "CCATG":42744, "CCACA":69298, "CCACT":34316, "CCACC":127572, "CCACG":44112, "CCAGA":58133, "CCAGT":44259, "CCAGC":98162, "CCAGG":58627, "CCTAA":22987, "CCTAT":26724, "CCTAC":31353, "CCTAG":18158, "CCTTA":21038, "CCTTT":61415, "CCTTC":81596, "CCTTG":58947, "CCTCA":59625, "CCTCT":57506, "CCTCC":127825, "CCTCG":55307, "CCTGA":45280, "CCTGT":51509, "CCTGC":98789, "CCTGG":62250, "CCCAA":89747, "CCCAT":47087, "CCCAC":82274, "CCCAG":66671, "CCCTA":28614, "CCCTT":49419, "CCCTC":66868, "CCCTG":54818, "CCCCA":88116, "CCCCT":58589, "CCCCC":63759, "CCCCG":58674, "CCCGA":43523, "CCCGT":32918, "CCCGC":71428, "CCCGG":51575, "CCGAA":45964, "CCGAT":39679, "CCGAC":43219, "CCGAG":43292, "CCGTA":22022, "CCGTT":35347, "CCGTC":44206, "CCGTG":32697, "CCGCA":49944, "CCGCT":51940, "CCGCC":111607, "CCGCG":46004, "CCGGA":44449, "CCGGT":44702, "CCGGC":68023, "CCGGG":48219, "CGAAA":44710, "CGAAT":27420, "CGAAC":35025, "CGAAG":48808, "CGATA":25007, "CGATT":34838, "CGATC":38186, "CGATG":47329, "CGACA":33550, "CGACT":30509, "CGACC":48452, "CGACG":42187, "CGAGA":38443, "CGAGT":22820, "CGAGC":37265, "CGAGG":44378, "CGTAA":19705, "CGTAT":17042, "CGTAC":15062, "CGTAG":21000, "CGTTA":13744, "CGTTT":34871, "CGTTC":34920, "CGTTG":37169, "CGTCA":30438, "CGTCT":35331, "CGTCC":38381, "CGTCG":40863, "CGTGA":26506, "CGTGT":18917, "CGTGC":26077, "CGTGG":38240, "CGCAA":34553, "CGCAT":25298, "CGCAC":30392, "CGCAG":38579, "CGCTA":16892, "CGCTT":42825, "CGCTC":38724, "CGCTG":47408, "CGCCA":65730, "CGCCT":67206, "CGCCC":67100, "CGCCG":76386, "CGCGA":30906, "CGCGT":21437, "CGCGC":38277, "CGCGG":43825, "CGGAA":41965, "CGGAT":33669, "CGGAC":24512, "CGGAG":42276, "CGGTA":22232, "CGGTT":43047, "CGGTC":39458, "CGGTG":50711, "CGGCA":48458, "CGGCT":58626, "CGGCC":57736, "CGGCG":69552, "CGGGA":37650, "CGGGT":38482, "CGGGC":44675, "CGGGG":48314, "GAAAA":79368, "GAAAT":49018, "GAAAC":50658, "GAAAG":52194, "GAATA":29634, "GAATT":38091, "GAATC":37026, "GAATG":31968, "GAACA":45208, "GAACT":35185, "GAACC":51115, "GAACG":30912, "GAAGA":74040, "GAAGT":36080, "GAAGC":66117, "GAAGG":62131, "GATAA":32438, "GATAT":28434, "GATAC":22608, "GATAG":26999, "GATTA":24536, "GATTT":53189, "GATTC":41015, "GATTG":39526, "GATCA":37034, "GATCT":40396, "GATCC":38091, "GATCG":34541, "GATGA":59465, "GATGT":35403, "GATGC":39209, "GATGG":55413, "GACAA":43413, "GACAT":27956, "GACAC":24586, "GACAG":28181, "GACTA":16318, "GACTT":36490, "GACTC":22640, "GACTG":25471, "GACCA":48598, "GACCT":35281, "GACCC":44109, "GACCG":38572, "GACGA":44662, "GACGT":22564, "GACGC":31113, "GACGG":36527, "GAGAA":64238, "GAGAT":44171, "GAGAC":38216, "GAGAG":36669, "GAGTA":16199, "GAGTT":33103, "GAGTC":21246, "GAGTG":20238, "GAGCA":44468, "GAGCT":30493, "GAGCC":42338, "GAGCG":30115, "GAGGA":81017, "GAGGT":40678, "GAGGC":50450, "GAGGG":44870, "GTAAA":20441, "GTAAT":18116, "GTAAC":18106, "GTAAG":13647, "GTATA":11355, "GTATT":23652, "GTATC":20442, "GTATG":19943, "GTACA":15310, "GTACT":15279, "GTACC":18515, "GTACG":14296, "GTAGA":26552, "GTAGT":19073, "GTAGC":23650, "GTAGG":23405, "GTTAA":16215, "GTTAT":22755, "GTTAC":21078, "GTTAG":14887, "GTTTA":21864, "GTTTT":69010, "GTTTC":52297, "GTTTG":60583, "GTTCA":36543, "GTTCT":47300, "GTTCC":57632, "GTTCG":35859, "GTTGA":47914, "GTTGT":54693, "GTTGC":47390, "GTTGG":80660, "GTCAA":33520, "GTCAT":29260, "GTCAC":23727, "GTCAG":25813, "GTCTA":19108, "GTCTT":44821, "GTCTC":44661, "GTCTG":35375, "GTCCA":36255, "GTCCT":38477, "GTCCC":33663, "GTCCG":25623, "GTCGA":33790, "GTCGT":33151, "GTCGC":34626, "GTCGG":36158, "GTGAA":37895, "GTGAT":34165, "GTGAC":21538, "GTGAG":27845, "GTGTA":12631, "GTGTT":40217, "GTGTC":20553, "GTGTG":29563, "GTGCA":23776, "GTGCT":36785, "GTGCC":35060, "GTGCG":25519, "GTGGA":45211, "GTGGT":63109, "GTGGC":49038, "GTGGG":59538, "GCAAA":46172, "GCAAT":31794, "GCAAC":47439, "GCAAG":39235, "GCATA":21961, "GCATT":32776, "GCATC":37424, "GCATG":29053, "GCACA":28464, "GCACT":20746, "GCACC":54904, "GCACG":26755, "GCAGA":44879, "GCAGT":27881, "GCAGC":58213, "GCAGG":71504, "GCTAA":17749, "GCTAT":24878, "GCTAC":25209, "GCTAG":15249, "GCTTA":21019, "GCTTT":55101, "GCTTC":79304, "GCTTG":57915, "GCTCA":36616, "GCTCT":36915, "GCTCC":61824, "GCTCG":39354, "GCTGA":45773, "GCTGT":42572, "GCTGC":64367, "GCTGG":87997, "GCCAA":63926, "GCCAT":44414, "GCCAC":55683, "GCCAG":57708, "GCCTA":25940, "GCCTT":53611, "GCCTC":64287, "GCCTG":64937, "GCCCA":63617, "GCCCT":49543, "GCCCC":58305, "GCCCG":48355, "GCCGA":56052, "GCCGT":44298, "GCCGC":74945, "GCCGG":61349, "GCGAA":37574, "GCGAT":36341, "GCGAC":34753, "GCGAG":32728, "GCGTA":15341, "GCGTT":30801, "GCGTC":28443, "GCGTG":28550, "GCGCA":31622, "GCGCT":34499, "GCGCC":52704, "GCGCG":34744, "GCGGA":42991, "GCGGT":49627, "GCGGC":66546, "GCGGG":55976, "GGAAA":59541, "GGAAT":41454, "GGAAC":47041, "GGAAG":58261, "GGATA":33012, "GGATT":47162, "GGATC":34925, "GGATG":51453, "GGACA":32778, "GGACT":25150, "GGACC":30361, "GGACG":32270, "GGAGA":70879, "GGAGT":28985, "GGAGC":46125, "GGAGG":84650, "GGTAA":20477, "GGTAT":24209, "GGTAC":17785, "GGTAG":29675, "GGTTA":22161, "GGTTT":74500, "GGTTC":50320, "GGTTG":86021, "GGTCA":34795, "GGTCT":47763, "GGTCC":30378, "GGTCG":39194, "GGTGA":51890, "GGTGT":45062, "GGTGC":46403, "GGTGG":94942, "GGCAA":49040, "GGCAT":39733, "GGCAC":32941, "GGCAG":53391, "GGCTA":27387, "GGCTT":67678, "GGCTC":44621, "GGCTG":76266, "GGCCA":48426, "GGCCT":45480, "GGCCC":39426, "GGCCG":52304, "GGCGA":58832, "GGCGT":39240, "GGCGC":48167, "GGCGG":87473, "GGGAA":42563, "GGGAT":40686, "GGGAC":27931, "GGGAG":49905, "GGGTA":21589, "GGGTT":72356, "GGGTC":39105, "GGGTG":59136, "GGGCA":45243, "GGGCT":50952, "GGGCC":37324, "GGGCG":53032, "GGGGA":48022, "GGGGT":58126, "GGGGC":46985, "GGGGG":43772 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-11A_S77_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-11A_S77_R2_001.fastq.gz -o AM-AL-11A.trim.R1.fastq.gz -O AM-AL-11A.trim.R2.fastq.gz -m --merged_out AM-AL-11A.trim.merged.fastq.gz " }