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"GGGCC":41388, "GGGCG":58117, "GGGGA":52887, "GGGGT":56523, "GGGGC":48529, "GGGGG":227607 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 971600, "total_bases": 59267600, "q20_bases": 56977513, "q30_bases": 53971453, "total_cycles": 61, "quality_curves": { "A":[39.2868,39.0787,39.0696,38.8371,39.0665,38.9116,39.028,38.7865,39.1226,39.1064,39.0841,39.0262,39.1126,39.1159,39.1135,39.1066,39.1158,39.0891,39.1169,39.0929,37.836,39.0183,39.1005,39.111,38.0016,39.0699,39.084,37.7409,38.9041,38.1512,39.0506,39.0494,38.9893,38.6898,39.004,38.9961,38.9993,38.9209,37.9353,38.7553,37.4151,38.3484,38.4739,38.3035,38.0061,37.4736,36.7741,36.2336,36.8303,36.3934,35.979,35.5542,35.1816,34.6487,34.4014,33.9649,33.6745,33.3497,33.0233,32.4654,32.1976], 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"GC":[0.547267,0.495313,0.569959,0.564217,0.564762,0.529743,0.534198,0.518223,0.513873,0.525938,0.530658,0.525738,0.535148,0.536896,0.534361,0.541186,0.539871,0.535983,0.542556,0.536632,0.534095,0.538981,0.538013,0.531174,0.535154,0.534216,0.528914,0.535706,0.534291,0.531533,0.535258,0.534324,0.530144,0.533199,0.532211,0.527084,0.530028,0.533595,0.526023,0.534867,0.530808,0.527413,0.532469,0.531294,0.532283,0.533915,0.534555,0.530678,0.533601,0.535972,0.533664,0.538134,0.534687,0.534601,0.539842,0.53876,0.536645,0.543612,0.542757,0.541748,0.54734,0.540657,0.54062,0.554804,0.545196,0.544057,0.549254,0.55619,0.551875,0.554754,0.54482,0.552652,0.56176,0.554237,0.557622,0.559258,0.551273,0.56073,0.564438,0.56118,0.559313,0.577909,0.565951,0.571529,0.58738,0.586838,0.589528,0.612849,0.605002,0.607898,0.539734] }, "kmer_count": { "AAAAA":65907, "AAAAT":40421, "AAAAC":47725, "AAAAG":44555, "AAATA":23986, "AAATT":30152, "AAATC":36708, "AAATG":27847, "AAACA":37776, "AAACT":25691, "AAACC":55579, 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"CTCAT":24084, "CTCAC":23770, "CTCAG":24259, "CTCTA":15046, "CTCTT":38949, "CTCTC":33739, "CTCTG":30310, "CTCCA":48011, "CTCCT":78912, "CTCCC":47801, "CTCCG":37845, "CTCGA":30300, "CTCGT":25925, "CTCGC":30743, "CTCGG":31923, "CTGAA":30271, "CTGAT":28523, "CTGAC":22040, "CTGAG":23232, "CTGTA":11487, "CTGTT":38794, "CTGTC":22040, "CTGTG":22849, "CTGCA":33668, "CTGCT":65313, "CTGCC":50032, "CTGCG":31348, "CTGGA":43650, "CTGGT":44791, "CTGGC":45066, "CTGGG":45118, "CCAAA":56580, "CCAAT":29324, "CCAAC":64199, "CCAAG":38616, "CCATA":20821, "CCATT":29462, "CCATC":44657, "CCATG":30626, "CCACA":43516, "CCACT":23681, "CCACC":91087, "CCACG":31725, "CCAGA":39163, "CCAGT":31389, "CCAGC":64910, "CCAGG":43436, "CCTAA":14662, "CCTAT":16485, "CCTAC":19849, "CCTAG":11865, "CCTTA":13594, "CCTTT":44442, "CCTTC":54296, "CCTTG":42003, "CCTCA":37497, "CCTCT":37959, "CCTCC":82952, "CCTCG":39495, "CCTGA":32250, "CCTGT":34855, "CCTGC":68902, "CCTGG":46801, "CCCAA":57200, "CCCAT":31977, "CCCAC":54317, "CCCAG":47429, "CCCTA":17674, "CCCTT":33435, "CCCTC":44244, "CCCTG":37877, "CCCCA":59914, "CCCCT":39108, "CCCCC":44842, "CCCCG":40300, "CCCGA":31872, "CCCGT":24140, "CCCGC":46930, "CCCGG":38949, "CCGAA":32846, "CCGAT":30846, "CCGAC":31504, "CCGAG":30905, "CCGTA":15523, "CCGTT":26146, "CCGTC":31725, "CCGTG":24238, "CCGCA":35027, "CCGCT":35086, "CCGCC":73918, "CCGCG":33824, "CCGGA":33475, "CCGGT":35038, "CCGGC":53130, "CCGGG":36736, "CGAAA":32605, "CGAAT":21113, "CGAAC":26848, "CGAAG":35838, "CGATA":19976, "CGATT":25835, "CGATC":30722, "CGATG":36849, "CGACA":24829, "CGACT":22469, "CGACC":35836, "CGACG":32799, "CGAGA":28959, "CGAGT":16124, "CGAGC":28682, "CGAGG":33716, "CGTAA":14394, "CGTAT":11436, "CGTAC":10601, "CGTAG":14652, "CGTTA":9413, "CGTTT":25634, "CGTTC":26006, "CGTTG":26687, "CGTCA":23006, "CGTCT":23623, "CGTCC":26681, "CGTCG":32105, "CGTGA":19726, "CGTGT":13295, "CGTGC":20301, "CGTGG":28045, "CGCAA":24907, "CGCAT":18780, "CGCAC":23209, "CGCAG":28857, "CGCTA":11027, "CGCTT":30197, "CGCTC":27723, "CGCTG":35655, "CGCCA":46210, "CGCCT":45197, "CGCCC":46406, "CGCCG":57325, "CGCGA":24940, "CGCGT":16702, "CGCGC":31731, "CGCGG":32900, "CGGAA":31284, "CGGAT":25160, "CGGAC":18509, "CGGAG":31269, "CGGTA":16908, "CGGTT":31416, "CGGTC":29543, "CGGTG":38579, "CGGCA":38407, "CGGCT":41320, "CGGCC":44129, "CGGCG":54294, "CGGGA":28136, "CGGGT":28879, "CGGGC":33846, "CGGGG":34756, "GAAAA":56712, "GAAAT":35527, "GAAAC":35179, "GAAAG":37096, "GAATA":20832, "GAATT":28022, "GAATC":27267, "GAATG":24282, "GAACA":31319, "GAACT":26137, "GAACC":36201, "GAACG":23603, "GAAGA":53078, "GAAGT":26660, "GAAGC":45749, "GAAGG":42754, "GATAA":23668, "GATAT":22723, "GATAC":16695, "GATAG":18950, "GATTA":17435, "GATTT":39954, "GATTC":29771, "GATTG":28050, "GATCA":30905, "GATCT":30417, "GATCC":30519, "GATCG":28458, "GATGA":44285, "GATGT":25865, "GATGC":29781, "GATGG":42172, "GACAA":29246, "GACAT":20788, "GACAC":16692, "GACAG":19969, "GACTA":10930, "GACTT":26304, "GACTC":16526, "GACTG":19142, "GACCA":33893, "GACCT":26867, "GACCC":31004, "GACCG":29153, "GACGA":34196, "GACGT":16286, "GACGC":23039, "GACGG":28908, "GAGAA":46000, "GAGAT":32194, "GAGAC":27448, "GAGAG":26902, "GAGTA":11239, "GAGTT":24149, "GAGTC":15651, "GAGTG":14073, "GAGCA":33931, "GAGCT":23283, "GAGCC":29708, "GAGCG":23680, "GAGGA":58344, "GAGGT":28896, "GAGGC":35519, "GAGGG":31766, "GTAAA":15328, "GTAAT":13686, "GTAAC":13051, "GTAAG":10062, "GTATA":7583, "GTATT":16763, "GTATC":15160, "GTATG":13280, "GTACA":11038, "GTACT":11082, "GTACC":13982, "GTACG":11253, "GTAGA":15980, "GTAGT":13068, "GTAGC":17410, "GTAGG":16343, "GTTAA":10630, "GTTAT":15752, "GTTAC":15057, "GTTAG":9834, "GTTTA":14992, "GTTTT":47240, "GTTTC":36772, "GTTTG":42150, "GTTCA":26575, "GTTCT":33168, "GTTCC":40586, "GTTCG":27137, "GTTGA":33759, "GTTGT":37460, "GTTGC":32334, "GTTGG":52905, "GTCAA":23996, "GTCAT":22109, "GTCAC":17890, "GTCAG":19621, "GTCTA":11220, "GTCTT":31737, "GTCTC":29827, "GTCTG":23639, "GTCCA":24896, "GTCCT":27721, "GTCCC":23606, "GTCCG":18852, "GTCGA":27474, "GTCGT":25321, "GTCGC":26032, "GTCGG":28060, "GTGAA":26351, "GTGAT":26669, "GTGAC":16544, "GTGAG":20113, "GTGTA":8708, "GTGTT":26215, "GTGTC":14827, "GTGTG":21121, "GTGCA":17891, "GTGCT":26517, "GTGCC":25614, "GTGCG":19906, "GTGGA":31650, "GTGGT":48114, "GTGGC":36673, "GTGGG":40213, "GCAAA":31555, "GCAAT":23541, "GCAAC":31296, "GCAAG":29047, "GCATA":14876, "GCATT":23375, "GCATC":28625, "GCATG":21623, "GCACA":20113, "GCACT":14479, "GCACC":39872, "GCACG":20783, "GCAGA":31910, "GCAGT":19875, "GCAGC":46325, "GCAGG":53601, "GCTAA":11179, "GCTAT":16450, "GCTAC":18493, "GCTAG":9729, "GCTTA":14026, "GCTTT":39172, "GCTTC":51967, "GCTTG":37874, "GCTCA":26125, "GCTCT":25619, "GCTCC":42598, "GCTCG":29946, "GCTGA":33153, "GCTGT":28702, "GCTGC":49492, "GCTGG":61517, "GCCAA":43573, "GCCAT":32543, "GCCAC":39611, "GCCAG":40943, "GCCTA":15528, "GCCTT":36900, "GCCTC":41713, "GCCTG":45708, "GCCCA":42280, "GCCCT":34071, "GCCCC":40930, "GCCCG":35086, "GCCGA":42095, "GCCGT":32777, "GCCGC":54644, "GCCGG":49642, "GCGAA":28354, "GCGAT":28803, "GCGAC":27269, "GCGAG":25803, "GCGTA":10621, "GCGTT":22124, "GCGTC":21451, "GCGTG":20815, "GCGCA":26040, "GCGCT":27121, "GCGCC":41687, "GCGCG":29887, "GCGGA":30816, "GCGGT":36073, "GCGGC":50141, "GCGGG":39450, "GGAAA":43496, "GGAAT":30569, "GGAAC":34509, "GGAAG":41751, "GGATA":22950, "GGATT":34117, "GGATC":27888, "GGATG":36443, "GGACA":22438, "GGACT":18610, "GGACC":23329, "GGACG":24456, "GGAGA":50720, "GGAGT":21266, "GGAGC":34595, "GGAGG":60030, "GGTAA":15032, "GGTAT":17521, "GGTAC":13999, "GGTAG":20004, "GGTTA":15179, "GGTTT":51242, "GGTTC":36066, "GGTTG":57820, "GGTCA":26603, "GGTCT":32968, "GGTCC":23505, "GGTCG":29587, "GGTGA":38577, "GGTGT":31233, "GGTGC":34725, "GGTGG":69788, "GGCAA":35576, "GGCAT":29243, "GGCAC":24775, "GGCAG":39824, "GGCTA":19066, "GGCTT":44555, "GGCTC":31209, "GGCTG":51662, "GGCCA":37624, "GGCCT":32850, "GGCCC":29443, "GGCCG":41163, "GGCGA":45145, "GGCGT":28471, "GGCGC":39362, "GGCGG":62598, "GGGAA":31593, "GGGAT":30187, "GGGAC":20877, "GGGAG":35175, "GGGTA":15779, "GGGTT":48229, "GGGTC":27870, "GGGTG":41083, "GGGCA":33184, "GGGCT":35032, "GGGCC":28116, "GGGCG":38427, "GGGGA":34916, "GGGGT":40198, "GGGGC":34398, "GGGGG":31218 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-10C_S76_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-10C_S76_R2_001.fastq.gz -o AM-AL-10C.trim.R1.fastq.gz -O AM-AL-10C.trim.R2.fastq.gz -m --merged_out AM-AL-10C.trim.merged.fastq.gz " }