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"GCGCA":49393, "GCGCT":45576, "GCGCC":69953, "GCGCG":54235, "GCGGA":49112, "GCGGT":52022, "GCGGC":82521, "GCGGG":60396, "GGAAA":58596, "GGAAT":38147, "GGAAC":46466, "GGAAG":490450, "GGATA":35222, "GGATT":42975, "GGATC":37450, "GGATG":52033, "GGACA":34768, "GGACT":24420, "GGACC":32808, "GGACG":36130, "GGAGA":106053, "GGAGT":27602, "GGAGC":49178, "GGAGG":81989, "GGTAA":22328, "GGTAT":22857, "GGTAC":20952, "GGTAG":48205, "GGTTA":24198, "GGTTT":62017, "GGTTC":45995, "GGTTG":71720, "GGTCA":41377, "GGTCT":42941, "GGTCC":32790, "GGTCG":43977, "GGTGA":61029, "GGTGT":41885, "GGTGC":52627, "GGTGG":92200, "GGCAA":55919, "GGCAT":42888, "GGCAC":38079, "GGCAG":77001, "GGCTA":32823, "GGCTT":61785, "GGCTC":42533, "GGCTG":74685, "GGCCA":66513, "GGCCT":48630, "GGCCC":45238, "GGCCG":68907, "GGCGA":70438, "GGCGT":45606, "GGCGC":70634, "GGCGG":96037, "GGGAA":45839, "GGGAT":40726, "GGGAC":28758, "GGGAG":60947, "GGGTA":26147, "GGGTT":61285, "GGGTC":38645, "GGGTG":58941, "GGGCA":54097, "GGGCT":49120, "GGGCC":43589, "GGGCG":62049, "GGGGA":51898, "GGGGT":55580, "GGGGC":49905, "GGGGG":114913 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 886859, "total_bases": 54098399, "q20_bases": 52300699, "q30_bases": 49757958, "total_cycles": 61, "quality_curves": { "A":[39.344,39.0405,38.9243,38.7925,39.02,39.1145,39.0826,38.92,39.0667,39.0695,39.0783,39.0817,39.0986,39.0686,39.0504,39.0762,39.0721,39.0614,39.1069,39.0494,38.4149,39.0181,39.0562,39.0724,38.5112,39.019,39.0641,38.4015,38.964,38.5831,39.0374,39.0567,39.0154,38.9036,38.5404,38.4255,38.9421,38.7807,38.4533,38.7725,38.7186,38.5585,38.5129,38.3388,38.112,37.8283,37.2276,36.9215,37.1784,36.7989,36.3682,36.0692,35.7552,35.1323,34.8894,34.377,34.0771,33.6614,33.3147,32.6476,32.3553], 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"CTCAT":22580, "CTCAC":21887, "CTCAG":22637, "CTCTA":13208, "CTCTT":34120, "CTCTC":29555, "CTCTG":27235, "CTCCA":43026, "CTCCT":69948, "CTCCC":43159, "CTCCG":34957, "CTCGA":28117, "CTCGT":22756, "CTCGC":28728, "CTCGG":29901, "CTGAA":27522, "CTGAT":25685, "CTGAC":20606, "CTGAG":21105, "CTGTA":10878, "CTGTT":36068, "CTGTC":19923, "CTGTG":20320, "CTGCA":30402, "CTGCT":60736, "CTGCC":48214, "CTGCG":29234, "CTGGA":38909, "CTGGT":41239, "CTGGC":42753, "CTGGG":42267, "CCAAA":49748, "CCAAT":25628, "CCAAC":57768, "CCAAG":36142, "CCATA":18413, "CCATT":26084, "CCATC":41011, "CCATG":28116, "CCACA":39532, "CCACT":21506, "CCACC":83282, "CCACG":30221, "CCAGA":35285, "CCAGT":29297, "CCAGC":63087, "CCAGG":40527, "CCTAA":12560, "CCTAT":14428, "CCTAC":18003, "CCTAG":10871, "CCTTA":12449, "CCTTT":39181, "CCTTC":50579, "CCTTG":39345, "CCTCA":34194, "CCTCT":33907, "CCTCC":75262, "CCTCG":36435, "CCTGA":29857, "CCTGT":32541, "CCTGC":65296, "CCTGG":43498, "CCCAA":52370, "CCCAT":29225, "CCCAC":50560, "CCCAG":44953, "CCCTA":15933, "CCCTT":30711, "CCCTC":40865, "CCCTG":35822, "CCCCA":56133, "CCCCT":36627, "CCCCC":42102, "CCCCG":38952, "CCCGA":29561, "CCCGT":22419, "CCCGC":45386, "CCCGG":36890, "CCGAA":30228, "CCGAT":28707, "CCGAC":29387, "CCGAG":27738, "CCGTA":14331, "CCGTT":23792, "CCGTC":28833, "CCGTG":22956, "CCGCA":33863, "CCGCT":32901, "CCGCC":73655, "CCGCG":32213, "CCGGA":30445, "CCGGT":32033, "CCGGC":49642, "CCGGG":34294, "CGAAA":28883, "CGAAT":19606, "CGAAC":24986, "CGAAG":32021, "CGATA":17767, "CGATT":23525, "CGATC":28239, "CGATG":34102, "CGACA":23002, "CGACT":21002, "CGACC":32369, "CGACG":29915, "CGAGA":24988, "CGAGT":14290, "CGAGC":26373, "CGAGG":29759, "CGTAA":13008, "CGTAT":10692, "CGTAC":10380, "CGTAG":13107, "CGTTA":8388, "CGTTT":22735, "CGTTC":23736, "CGTTG":24220, "CGTCA":21083, "CGTCT":21116, "CGTCC":24590, "CGTCG":28914, "CGTGA":18032, "CGTGT":12141, "CGTGC":19331, "CGTGG":26686, "CGCAA":23002, "CGCAT":18019, "CGCAC":22351, "CGCAG":27180, "CGCTA":10481, "CGCTT":27198, "CGCTC":26476, "CGCTG":34112, "CGCCA":45236, "CGCCT":43774, "CGCCC":45067, "CGCCG":55303, "CGCGA":23470, "CGCGT":15749, "CGCGC":31080, "CGCGG":30751, "CGGAA":27763, "CGGAT":22550, "CGGAC":16504, "CGGAG":27932, "CGGTA":15551, "CGGTT":27965, "CGGTC":26556, "CGGTG":36064, "CGGCA":36295, "CGGCT":38942, "CGGCC":42964, "CGGCG":50729, "CGGGA":25563, "CGGGT":27028, "CGGGC":31332, "CGGGG":32484, "GAAAA":48195, "GAAAT":30326, "GAAAC":31179, "GAAAG":32351, "GAATA":17577, "GAATT":24274, "GAATC":23558, "GAATG":20987, "GAACA":28350, "GAACT":23474, "GAACC":32782, "GAACG":20922, "GAAGA":44851, "GAAGT":23367, "GAAGC":40697, "GAAGG":37695, "GATAA":20438, "GATAT":19303, "GATAC":14834, "GATAG":16494, "GATTA":15115, "GATTT":34786, "GATTC":26257, "GATTG":25085, "GATCA":28025, "GATCT":26825, "GATCC":26904, "GATCG":26287, "GATGA":39349, "GATGT":23513, "GATGC":27465, "GATGG":37479, "GACAA":25544, "GACAT":18131, "GACAC":15453, "GACAG":18103, "GACTA":9729, "GACTT":23921, "GACTC":14201, "GACTG":16614, "GACCA":31034, "GACCT":24988, "GACCC":29335, "GACCG":26369, "GACGA":30005, "GACGT":14869, "GACGC":22072, "GACGG":25309, "GAGAA":37852, "GAGAT":27237, "GAGAC":23856, "GAGAG":22756, "GAGTA":9816, "GAGTT":20844, "GAGTC":13939, "GAGTG":12446, "GAGCA":30367, "GAGCT":20774, "GAGCC":26867, "GAGCG":21684, "GAGGA":49514, "GAGGT":25989, "GAGGC":31566, "GAGGG":28339, "GTAAA":12855, "GTAAT":11050, "GTAAC":12017, "GTAAG":8887, "GTATA":6504, "GTATT":15050, "GTATC":13493, "GTATG":11781, "GTACA":10541, "GTACT":10354, "GTACC":13543, "GTACG":10333, "GTAGA":14397, "GTAGT":11498, "GTAGC":16200, "GTAGG":14491, "GTTAA":9255, "GTTAT":13943, "GTTAC":14633, "GTTAG":8587, "GTTTA":12925, "GTTTT":41832, "GTTTC":33099, "GTTTG":36940, "GTTCA":23523, "GTTCT":29106, "GTTCC":36968, "GTTCG":25172, "GTTGA":29592, "GTTGT":33272, "GTTGC":29779, "GTTGG":47972, "GTCAA":20915, "GTCAT":19639, "GTCAC":16765, "GTCAG":18098, "GTCTA":10468, "GTCTT":27791, "GTCTC":26684, "GTCTG":21529, "GTCCA":22951, "GTCCT":25325, "GTCCC":21656, "GTCCG":17282, "GTCGA":24951, "GTCGT":23021, "GTCGC":23769, "GTCGG":25725, "GTGAA":23700, "GTGAT":24447, "GTGAC":15376, "GTGAG":17719, "GTGTA":7802, "GTGTT":23725, "GTGTC":13295, "GTGTG":18185, "GTGCA":16292, "GTGCT":25235, "GTGCC":23802, "GTGCG":19330, "GTGGA":27973, "GTGGT":44286, "GTGGC":34285, "GTGGG":36764, "GCAAA":28136, "GCAAT":20314, "GCAAC":28774, "GCAAG":26331, "GCATA":13027, "GCATT":21235, "GCATC":26263, "GCATG":19927, "GCACA":18978, "GCACT":13484, "GCACC":37375, "GCACG":20027, "GCAGA":27380, "GCAGT":18216, "GCAGC":43817, "GCAGG":49764, "GCTAA":9648, "GCTAT":14970, "GCTAC":17461, "GCTAG":8640, "GCTTA":12434, "GCTTT":35260, "GCTTC":47205, "GCTTG":34683, "GCTCA":24806, "GCTCT":23192, "GCTCC":39204, "GCTCG":28355, "GCTGA":30735, "GCTGT":26348, "GCTGC":46662, "GCTGG":58596, "GCCAA":39368, "GCCAT":30574, "GCCAC":37896, "GCCAG":39733, "GCCTA":14266, "GCCTT":33984, "GCCTC":39358, "GCCTG":44337, "GCCCA":40584, "GCCCT":31708, "GCCCC":39726, "GCCCG":33835, "GCCGA":39589, "GCCGT":30955, "GCCGC":55074, "GCCGG":46586, "GCGAA":25642, "GCGAT":25934, "GCGAC":23585, "GCGAG":23087, "GCGTA":9977, "GCGTT":20092, "GCGTC":20091, "GCGTG":19956, "GCGCA":24853, "GCGCT":25958, "GCGCC":40352, "GCGCG":29211, "GCGGA":28262, "GCGGT":33549, "GCGGC":48149, "GCGGG":37459, "GGAAA":36967, "GGAAT":26443, "GGAAC":30711, "GGAAG":36578, "GGATA":19764, "GGATT":30107, "GGATC":24780, "GGATG":33053, "GGACA":20347, "GGACT":15908, "GGACC":21446, "GGACG":21394, "GGAGA":42737, "GGAGT":18281, "GGAGC":30728, "GGAGG":53082, "GGTAA":13457, "GGTAT":15180, "GGTAC":13098, "GGTAG":18807, "GGTTA":13453, "GGTTT":45654, "GGTTC":32190, "GGTTG":52036, "GGTCA":24205, "GGTCT":29736, "GGTCC":21373, "GGTCG":27077, "GGTGA":35475, "GGTGT":28728, "GGTGC":33033, "GGTGG":64544, "GGCAA":32090, "GGCAT":26734, "GGCAC":23345, "GGCAG":36930, "GGCTA":17500, "GGCTT":40993, "GGCTC":28522, "GGCTG":48129, "GGCCA":35439, "GGCCT":31296, "GGCCC":27777, "GGCCG":39654, "GGCGA":39837, "GGCGT":26807, "GGCGC":37994, "GGCGG":59675, "GGGAA":27870, "GGGAT":27015, "GGGAC":18068, "GGGAG":30936, "GGGTA":14072, "GGGTT":43923, "GGGTC":25815, "GGGTG":38136, "GGGCA":30584, "GGGCT":32751, "GGGCC":26450, "GGGCG":36045, "GGGGA":31213, "GGGGT":36814, "GGGGC":32221, "GGGGG":28386 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-10B_S75_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-10B_S75_R2_001.fastq.gz -o AM-AL-10B.trim.R1.fastq.gz -O AM-AL-10B.trim.R2.fastq.gz -m --merged_out AM-AL-10B.trim.merged.fastq.gz " }