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"CGGAC":30854, "CGGAG":61394, "CGGTA":33139, "CGGTT":44048, "CGGTC":44587, "CGGTG":60657, "CGGCA":73427, "CGGCT":66143, "CGGCC":80772, "CGGCG":99392, "CGGGA":47497, "CGGGT":44784, "CGGGC":58999, "CGGGG":57044, "GAAAA":73768, "GAAAT":48029, "GAAAC":49432, "GAAAG":59930, "GAATA":29660, "GAATT":35214, "GAATC":38199, "GAATG":32795, "GAACA":52768, "GAACT":177766, "GAACC":55123, "GAACG":37513, "GAAGA":461477, "GAAGT":42444, "GAAGC":71997, "GAAGG":68816, "GATAA":33282, "GATAT":29366, "GATAC":25396, "GATAG":39622, "GATTA":24024, "GATTT":49141, "GATTC":41584, "GATTG":40091, "GATCA":50485, "GATCT":40400, "GATCC":45535, "GATCG":467971, "GATGA":65966, "GATGT":38146, "GATGC":49832, "GATGG":62602, "GACAA":44631, "GACAT":31374, "GACAC":26912, "GACAG":41456, "GACTA":28375, "GACTT":37629, "GACTC":25720, "GACTG":31036, "GACCA":56250, "GACCT":43364, "GACCC":50045, "GACCG":46687, "GACGA":55558, "GACGT":26976, "GACGC":40207, "GACGG":47087, "GAGAA":64869, "GAGAT":131887, "GAGAC":40628, "GAGAG":45030, "GAGTA":18575, "GAGTT":33055, "GAGTC":22882, "GAGTG":21451, "GAGCA":369444, "GAGCT":38355, "GAGCC":47693, "GAGCG":41432, "GAGGA":88520, "GAGGT":46415, "GAGGC":59210, "GAGGG":49945, "GTAAA":21106, "GTAAT":18386, "GTAAC":21022, "GTAAG":18847, "GTATA":11273, "GTATT":22677, "GTATC":22721, "GTATG":18783, "GTACA":19677, "GTACT":16676, "GTACC":22799, "GTACG":18602, "GTAGA":63974, "GTAGT":19322, "GTAGC":29287, "GTAGG":26943, "GTTAA":14768, "GTTAT":20458, "GTTAC":23154, "GTTAG":22974, "GTTTA":21820, "GTTTT":57367, "GTTTC":48210, "GTTTG":54453, "GTTCA":40252, "GTTCT":43305, "GTTCC":57854, "GTTCG":42208, "GTTGA":48832, "GTTGT":46672, "GTTGC":47571, "GTTGG":69587, "GTCAA":36956, "GTCAT":31188, "GTCAC":81459, "GTCAG":39092, "GTCTA":18650, "GTCTT":42918, "GTCTC":39084, "GTCTG":228044, "GTCCA":41003, "GTCCT":40310, "GTCCC":35003, "GTCCG":30443, "GTCGA":46299, "GTCGT":38913, "GTCGC":42579, "GTCGG":45630, "GTGAA":46530, "GTGAT":41021, "GTGAC":28511, "GTGAG":33803, "GTGTA":15018, "GTGTT":35340, "GTGTC":22045, "GTGTG":29351, "GTGCA":31643, "GTGCT":41016, "GTGCC":41841, "GTGCG":35162, "GTGGA":50591, "GTGGT":63576, "GTGGC":59349, "GTGGG":58503, "GCAAA":51169, "GCAAT":34492, "GCAAC":49275, "GCAAG":58672, "GCATA":24520, "GCATT":33278, "GCATC":47501, "GCATG":36711, "GCACA":317521, "GCACT":23701, "GCACC":65695, "GCACG":38561, "GCAGA":93658, "GCAGT":31339, "GCAGC":80444, "GCAGG":94414, "GCTAA":18381, "GCTAT":25910, "GCTAC":30929, "GCTAG":25457, "GCTTA":26382, "GCTTT":52942, "GCTTC":75922, "GCTTG":56034, "GCTCA":44061, "GCTCT":37388, "GCTCC":61652, "GCTCG":49302, "GCTGA":56081, "GCTGT":45101, "GCTGC":79763, "GCTGG":100750, "GCCAA":71467, "GCCAT":55756, "GCCAC":67204, "GCCAG":95558, "GCCTA":28296, "GCCTT":54930, "GCCTC":62674, "GCCTG":77242, "GCCCA":75766, "GCCCT":53637, "GCCCC":66248, "GCCCG":62944, "GCCGA":77318, "GCCGT":55953, "GCCGC":100622, "GCCGG":87213, "GCGAA":49737, "GCGAT":46437, "GCGAC":46304, "GCGAG":50302, "GCGTA":21595, "GCGTT":35079, "GCGTC":36872, "GCGTG":38997, "GCGCA":55166, "GCGCT":49614, "GCGCC":79620, "GCGCG":60949, "GCGGA":55527, "GCGGT":57098, "GCGGC":92767, "GCGGG":67474, "GGAAA":62565, "GGAAT":41289, "GGAAC":53552, "GGAAG":443929, "GGATA":36823, "GGATT":45467, "GGATC":41330, "GGATG":57600, "GGACA":38431, "GGACT":27520, "GGACC":36797, "GGACG":40648, "GGAGA":110123, "GGAGT":29904, "GGAGC":56520, "GGAGG":95544, "GGTAA":24358, "GGTAT":24167, "GGTAC":23064, "GGTAG":50805, "GGTTA":24614, "GGTTT":64243, "GGTTC":50068, "GGTTG":75696, "GGTCA":43514, "GGTCT":45454, "GGTCC":35730, "GGTCG":46844, "GGTGA":66062, "GGTGT":43135, "GGTGC":55657, "GGTGG":97152, "GGCAA":61471, "GGCAT":48488, "GGCAC":42245, "GGCAG":84787, "GGCTA":35132, "GGCTT":67431, "GGCTC":47094, "GGCTG":83112, "GGCCA":74369, "GGCCT":53629, "GGCCC":50745, "GGCCG":78126, "GGCGA":80584, "GGCGT":50203, "GGCGC":79901, "GGCGG":107812, "GGGAA":49746, "GGGAT":43328, "GGGAC":33144, "GGGAG":65032, "GGGTA":27131, "GGGTT":64894, "GGGTC":41103, "GGGTG":62553, "GGGCA":60426, "GGGCT":53683, "GGGCC":47819, "GGGCG":70188, "GGGGA":56515, "GGGGT":57629, "GGGGC":56373, "GGGGG":96998 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 925158, "total_bases": 56434638, "q20_bases": 54976870, "q30_bases": 52544826, "total_cycles": 61, "quality_curves": { "A":[39.2092,39.1054,38.9742,38.9904,38.8937,39.1262,39.1065,38.9262,39.0769,39.0801,39.1122,39.1304,39.1599,39.1315,39.1117,39.0917,39.1285,39.1398,39.1557,39.1105,38.6466,39.0883,39.1086,39.1178,38.7108,39.0877,39.1449,38.6285,39.0275,38.8141,39.0726,39.1017,39.0599,39.1054,39.0556,39.0146,39.0025,38.9921,38.9288,38.8744,38.7346,38.2988,38.5887,38.4712,38.2634,38.0133,37.6323,37.3729,37.6081,37.3069,37.0278,36.7903,36.7151,36.1708,36.066,35.781,35.6052,35.376,35.1993,34.7249,34.4986], 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"GC":[0.596944,0.518991,0.59214,0.589951,0.590988,0.537876,0.544354,0.525181,0.519644,0.538592,0.538075,0.533643,0.549134,0.547932,0.54449,0.554062,0.552049,0.545126,0.553457,0.549096,0.545824,0.552964,0.55043,0.543636,0.553213,0.549338,0.541843,0.550722,0.550198,0.543661,0.552262,0.547265,0.541176,0.548839,0.546783,0.541298,0.546238,0.544492,0.539025,0.547096,0.54468,0.539336,0.544784,0.540473,0.540309,0.546241,0.54177,0.537857,0.54443,0.542706,0.537586,0.548619,0.544922,0.540523,0.546472,0.54331,0.538826,0.545554,0.543811,0.540681,0.55006,0.546843,0.544725,0.555039,0.546161,0.539444,0.553837,0.548771,0.544252,0.550203,0.555466,0.545675,0.554355,0.559137,0.551808,0.55597,0.555564,0.55695,0.567468,0.561329,0.554759,0.58074,0.574689,0.576184,0.586586,0.593232,0.591002,0.61023,0.602135,0.595658,0.522752] }, "kmer_count": { "AAAAA":58047, "AAAAT":36064, "AAAAC":46025, "AAAAG":41195, "AAATA":21822, "AAATT":25458, "AAATC":35009, "AAATG":25894, "AAACA":36795, "AAACT":24493, "AAACC":54493, 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"CTCAT":25248, "CTCAC":24711, "CTCAG":25884, "CTCTA":15214, "CTCTT":36751, "CTCTC":32826, "CTCTG":30874, "CTCCA":48303, "CTCCT":78510, "CTCCC":48275, "CTCCG":39791, "CTCGA":32125, "CTCGT":25012, "CTCGC":33149, "CTCGG":33222, "CTGAA":30092, "CTGAT":28131, "CTGAC":23285, "CTGAG":24131, "CTGTA":11198, "CTGTT":39195, "CTGTC":22821, "CTGTG":22740, "CTGCA":35811, "CTGCT":68546, "CTGCC":54142, "CTGCG":33963, "CTGGA":44231, "CTGGT":44987, "CTGGC":48603, "CTGGG":46775, "CCAAA":56526, "CCAAT":28636, "CCAAC":64926, "CCAAG":41055, "CCATA":20715, "CCATT":28731, "CCATC":46605, "CCATG":31982, "CCACA":46678, "CCACT":24961, "CCACC":96366, "CCACG":35235, "CCAGA":41183, "CCAGT":33494, "CCAGC":73634, "CCAGG":47592, "CCTAA":14363, "CCTAT":16338, "CCTAC":20815, "CCTAG":12654, "CCTTA":13713, "CCTTT":41614, "CCTTC":56404, "CCTTG":44001, "CCTCA":39632, "CCTCT":38086, "CCTCC":84615, "CCTCG":41191, "CCTGA":33400, "CCTGT":35774, "CCTGC":75189, "CCTGG":48840, "CCCAA":59368, "CCCAT":32908, "CCCAC":58250, "CCCAG":52585, "CCCTA":18431, "CCCTT":32690, "CCCTC":45722, "CCCTG":40784, "CCCCA":63943, "CCCCT":41328, "CCCCC":47442, "CCCCG":43956, "CCCGA":34179, "CCCGT":25165, "CCCGC":52973, "CCCGG":42126, "CCGAA":33804, "CCGAT":32421, "CCGAC":33483, "CCGAG":32928, "CCGTA":15969, "CCGTT":26391, "CCGTC":32688, "CCGTG":25453, "CCGCA":38947, "CCGCT":38266, "CCGCC":84463, "CCGCG":36979, "CCGGA":35227, "CCGGT":36798, "CCGGC":57802, "CCGGG":39627, "CGAAA":30964, "CGAAT":21282, "CGAAC":28214, "CGAAG":37304, "CGATA":20399, "CGATT":26453, "CGATC":31573, "CGATG":37961, "CGACA":26056, "CGACT":24749, "CGACC":37309, "CGACG":34828, "CGAGA":29092, "CGAGT":16232, "CGAGC":31025, "CGAGG":35815, "CGTAA":14439, "CGTAT":11658, "CGTAC":11210, "CGTAG":14861, "CGTTA":9400, "CGTTT":24772, "CGTTC":26565, "CGTTG":26751, "CGTCA":23591, "CGTCT":23467, "CGTCC":28535, "CGTCG":32893, "CGTGA":20471, "CGTGT":12875, "CGTGC":21498, "CGTGG":29552, "CGCAA":25919, "CGCAT":20091, "CGCAC":25936, "CGCAG":31719, "CGCTA":11516, "CGCTT":30892, "CGCTC":29781, "CGCTG":38825, "CGCCA":52849, "CGCCT":49747, "CGCCC":51698, "CGCCG":64018, "CGCGA":26545, "CGCGT":17728, "CGCGC":35747, "CGCGG":35855, "CGGAA":32276, "CGGAT":25237, "CGGAC":19146, "CGGAG":33727, "CGGTA":18445, "CGGTT":31726, "CGGTC":30094, "CGGTG":39803, "CGGCA":41556, "CGGCT":45044, "CGGCC":49760, "CGGCG":58540, "CGGGA":29809, "CGGGT":30046, "CGGGC":36581, "CGGGG":37163, "GAAAA":52276, "GAAAT":33140, "GAAAC":34101, "GAAAG":35746, "GAATA":19260, "GAATT":25587, "GAATC":26637, "GAATG":22570, "GAACA":32623, "GAACT":25489, "GAACC":37762, "GAACG":24112, "GAAGA":52374, "GAAGT":26210, "GAAGC":48395, "GAAGG":45114, "GATAA":21764, "GATAT":20711, "GATAC":16729, "GATAG":18548, "GATTA":16111, "GATTT":36847, "GATTC":29176, "GATTG":28171, "GATCA":31358, "GATCT":28975, "GATCC":31181, "GATCG":29264, "GATGA":43852, "GATGT":25371, "GATGC":30950, "GATGG":41958, "GACAA":29320, "GACAT":20300, "GACAC":17670, "GACAG":20725, "GACTA":11125, "GACTT":27441, "GACTC":17345, "GACTG":19381, "GACCA":35570, "GACCT":28250, "GACCC":34321, "GACCG":30595, "GACGA":34563, "GACGT":16917, "GACGC":25114, "GACGG":29361, "GAGAA":43747, "GAGAT":30119, "GAGAC":27798, "GAGAG":26341, "GAGTA":11147, "GAGTT":22922, "GAGTC":15849, "GAGTG":13933, "GAGCA":35798, "GAGCT":24244, "GAGCC":31874, "GAGCG":24971, "GAGGA":59950, "GAGGT":30177, "GAGGC":38689, "GAGGG":33053, "GTAAA":14068, "GTAAT":12505, "GTAAC":13214, "GTAAG":9902, "GTATA":7222, "GTATT":15783, "GTATC":14669, "GTATG":12616, "GTACA":11676, "GTACT":10957, "GTACC":14733, "GTACG":11612, "GTAGA":16286, "GTAGT":12900, "GTAGC":18000, "GTAGG":16285, "GTTAA":9888, "GTTAT":14446, "GTTAC":16670, "GTTAG":9924, "GTTTA":13730, "GTTTT":42874, "GTTTC":34747, "GTTTG":40840, "GTTCA":26558, "GTTCT":31978, "GTTCC":41526, "GTTCG":28581, "GTTGA":32846, "GTTGT":34464, "GTTGC":33076, "GTTGG":51517, "GTCAA":23183, "GTCAT":20882, "GTCAC":19212, "GTCAG":20146, "GTCTA":11305, "GTCTT":30519, "GTCTC":29482, "GTCTG":23873, "GTCCA":26387, "GTCCT":28305, "GTCCC":24907, "GTCCG":19197, "GTCGA":28145, "GTCGT":25349, "GTCGC":26759, "GTCGG":28714, "GTGAA":26854, "GTGAT":26478, "GTGAC":17688, "GTGAG":19929, "GTGTA":8201, "GTGTT":25224, "GTGTC":14427, "GTGTG":20247, "GTGCA":18646, "GTGCT":26442, "GTGCC":26557, "GTGCG":20926, "GTGGA":31918, "GTGGT":46769, "GTGGC":39122, "GTGGG":39694, "GCAAA":31467, "GCAAT":22721, "GCAAC":32724, "GCAAG":30246, "GCATA":14445, "GCATT":22897, "GCATC":29884, "GCATG":22572, "GCACA":21369, "GCACT":15333, "GCACC":43938, "GCACG":22593, "GCAGA":32371, "GCAGT":20569, "GCAGC":52151, "GCAGG":60279, "GCTAA":10617, "GCTAT":17080, "GCTAC":19901, "GCTAG":9751, "GCTTA":14039, "GCTTT":38465, "GCTTC":54588, "GCTTG":38924, "GCTCA":28151, "GCTCT":26150, "GCTCC":44744, "GCTCG":32393, "GCTGA":34924, "GCTGT":29472, "GCTGC":53591, "GCTGG":65727, "GCCAA":45677, "GCCAT":35195, "GCCAC":45059, "GCCAG":46524, "GCCTA":16536, "GCCTT":37453, "GCCTC":44868, "GCCTG":49877, "GCCCA":47714, "GCCCT":35932, "GCCCC":45111, "GCCCG":39058, "GCCGA":45491, "GCCGT":34630, "GCCGC":63161, "GCCGG":53873, "GCGAA":29180, "GCGAT":29859, "GCGAC":28078, "GCGAG":27349, "GCGTA":11409, "GCGTT":22526, "GCGTC":22661, "GCGTG":22312, "GCGCA":28826, "GCGCT":29158, "GCGCC":47182, "GCGCG":33220, "GCGGA":33042, "GCGGT":38539, "GCGGC":55885, "GCGGG":43369, "GGAAA":40862, "GGAAT":29157, "GGAAC":36035, "GGAAG":42939, "GGATA":21630, "GGATT":32680, "GGATC":28099, "GGATG":37799, "GGACA":23413, "GGACT":18421, "GGACC":24702, "GGACG":24869, "GGAGA":49289, "GGAGT":20412, "GGAGC":36895, "GGAGG":64648, "GGTAA":15064, "GGTAT":16516, "GGTAC":15022, "GGTAG":21385, "GGTTA":14736, "GGTTT":48129, "GGTTC":36640, "GGTTG":56574, "GGTCA":26634, "GGTCT":32621, "GGTCC":24248, "GGTCG":30075, "GGTGA":40187, "GGTGT":30894, "GGTGC":36028, "GGTGG":69325, "GGCAA":36608, "GGCAT":30748, "GGCAC":26655, "GGCAG":44135, "GGCTA":20253, "GGCTT":46695, "GGCTC":32775, "GGCTG":56013, "GGCCA":41720, "GGCCT":34944, "GGCCC":32109, "GGCCG":45867, "GGCGA":47257, "GGCGT":30362, "GGCGC":44072, "GGCGG":69216, "GGGAA":31301, "GGGAT":29569, "GGGAC":21384, "GGGAG":35512, "GGGTA":14983, "GGGTT":47715, "GGGTC":28340, "GGGTG":41610, "GGGCA":35422, "GGGCT":37082, "GGGCC":29777, "GGGCG":41995, "GGGGA":35283, "GGGGT":39099, "GGGGC":37287, "GGGGG":31005 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-10A_S74_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-10A_S74_R2_001.fastq.gz -o AM-AL-10A.trim.R1.fastq.gz -O AM-AL-10A.trim.R2.fastq.gz -m --merged_out AM-AL-10A.trim.merged.fastq.gz " }